YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEPA_CANLF
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLLISLV ALSECAIVKV PLVRKKSLRQ NLIEHGLLND FLKNQSPNPA SKYFPQEPTV  60
   61 LATQSLKNYM DMEYFGTIGI GTPPQEFTVI FDTGSSNLWV PSVYCSSPAC SNHNRFNPQE 120
  121 SSTYQGTNRP VSIAYGTGSM TGILGYDTVQ VGGIADTNQI FGLSETEPGS FLYYAPFDGI 180
  181 LGLAYPQISA SGATPVFDNM WNEGLVSQDL FSVYLSSDDQ SGSVVMFGGI DSSYYSGNLN 240
  241 WVPVSVEGYW QITVDSVTMN GQAIACSDGC QAIVDTGTSL LAGPTNAIAN IQSYIGASQN 300
  301 SYGQMVISCS AINSLPDIVF TINGIQYPLP PSAYILQSQQ GCVSGFQGMN LPTASGELWI 360
  361 LGDVFIRQYF AVFDRANNQV GLAPVA

Type	Start	End	Confidence
Signal Peptide	1	15	0.99
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	386	0.99