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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RPN1_PIG
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.68
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPAVCLLP LLLLLWAWAP APGRASPEAL PLVNEDVKRT VDLSSHLAKV TAEVVLAHAG  60
   61 SSSSPRAASF LLALEPELEA RLAHLGVQVK GEDEEENNLE VRETKIKGKR GRFFTVTLPV 120
  121 ALDPGAKISV TVETVYTHVL QPYPTQITQS EKQFVVFEGN HYFYSPYPTK SQSMRVKLAS 180
  181 RNVESYTKLG NPTRSEDLLD YGPFRDVPPY SQDTFKVHSE NNSPFLTITS MTRVIEVSHW 240
  241 GNIAVEENVD LKHTGAVLKG PFSRYDYQRQ PDSGISSIRS FKTILPAAAQ DVYYRDEIGN 300
  301 VSTSHLLILD DSVEMEIRPR FPLFGGWKTH YIVGYNLPSY EYLYNLGDQY ALKMRLVDHV 360
  361 FDEQVIDSLT VKIILPEGAK NIQVDSPYEI SRAPDELHYT YLDTFGRPVI VAHKKNLVEQ 420
  421 HIQDIVVHYT FNKVLMLQEP LLVVAAFYIL FFTVIVYVRL DFSITKDPAA EARMKVACIT 480
  481 EQVLTLVNKR IGLYRHFDET INRYKQSRDV STLNSGKKSL ELEHKALTSE VALLQSRLKT 540
  541 EGSDLCDKVS EMQKLDAQVK ELVLKSAVEA ERLVAGKLKK DTYIENEKLI SGKRQELVTK 600
  601 IDHILDAL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle