YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47522966, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTSAVMDS SDIQRTSIAV IGGGLVGSLN ACFLAKRNFQ VDVYESREDI RMAEFARGRS  60
   61 INLALSYRGR QALKAIGLED QIVSQGIPMR ARMIHSLSGK KSAIPYGTKS QYILSISREN 120
  121 LNKDLLTAVE KYPNAKVHFG HQLLKCRPET GVITLLGPDK VPKDIACDLI LGCDGAYSTV 180
  181 RTHLVKKPRF DYSQQYIPHG YMELTIPPQN GDFAMEPNYL HIWPRDTFMM IALPNMNKSF 240
  241 TCTLFMPFEE FEKLLTSRDV LDFFQKYFPD SLHLIGKEAL AQDFFRLPAQ PMISVKCSSF 300
  301 HFNSHCVLMG DAAHALVPFF GQGMNAGFED CLVFDELMDK FNNDFSMCLP EFSKFRIPDD 360
  361 HAISDLSMYN YIEMRSHVNS RWFIFQKNIE RCLHTLMPST FIPLYTMVTF SRIRYHEAML 420
  421 RWQWQKKVIN TALFFFGTLV ALSTTYLLTG PTFRSSLGCL RRSWNSVTYF QNIGRISL

Type	Start	End	Confidence
Non-Cytoplasmic	1	392	0.86
Transmembrane Helix	393	413	0.80
Cytoplasmic	414	427	0.85
Transmembrane Helix	428	450	0.87
Non-Cytoplasmic	451	478	0.90