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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2462979, gi|2...
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTQCSLTSN LALLMLLGTV TAGPFSPRSN MTLPAPRPPP QPGGRTVQPE GGGPSSRLYE  60
   61 HTVEGGEKQV VFTHRINLPP SAGCGCPPGT EPPVPASEVQ ALRVRLEILE ELVKGLKEQC 120
  121 TGGCCPPAAQ AGTGQTDIRS LCSLHGVFDL SRCACSCEPG WGGPTCSDPE GAEGPPSSPP 180
  181 SAPGSCPDDC NDQGRCVRGR CVCFPGYTGP SCSWPSCPGD CHGRGRCVQG VCVCRSGFSG 240
  241 DDCSVRSCPR GCSQRGRCED GRCVCNPGYS GEDCGVRSCP RDCSQRGRCE NGRCVCNPGY 300
  301 TGDDCGVRSC PRGCSQKGRC EDGRCVCDPG YTGDDCGSRT CPWDCGEGGR CVDGRCVCWP 360
  361 GYAGEDCSTR TCPRDCRGPR GCEDGECICD PGYSGDDCGV RSCPSDCNQR GRCEDGRCVC 420
  421 WPGYSGPDCG ARACPRDCRG RGRCENGVCV CHAGYSGEDC GVRSCPGDCR RRGRCESGRC 480
  481 VCWPGYTGRD CGTRACPGDC RGRGRCVDGR CVCNPGFAGE DCGSRRCPGD CRGRGRCGDG 540
  541 VCSCDVGYEG EDCGKRSCPR GCQGRGQCLE GRCVCDDGYE GEDCGVRRCP RDCNQRGVCQ 600
  601 DGVCTCWEGF AGEDCGLRVC PSNCHRRGRC ENGRCVCDSG YTGPSCATRT CPADCRGRGR 660
  661 CVQGVCVCHV GYSGEDCGQE EPPASACPGG CGPRELCSAG QCVCVEGFRG PDCAIQTCPG 720
  721 DCRGRGECRE GSCVCQDGYA GEDCGEEVPA IEGMRMHLLE ETTVRTEWTR APGNVDAYEI 780
  781 QFIPTTEGAS PPFTARVPSS ASAYDQRGLA PGQEYQVTVR ALRGTNWGPP ASKTITTMID 840
  841 GPQDLRVVAV TPTTLELNWL RPQAEVDRFV VSYVSAGNQR VRLEVPSEAD GTLLTGLMPG 900
  901 VEYVVTVTAE RGRAVSYPAS IRANTGSSLS GLLGATDEPP PSGPSTTQGA QAPVLQQRPQ 960
  961 ELAELRVLGK DKTGRLRVAW TAQPDTFTHF QLRLRVPEGP GAHEELLPGD VRQALVPSPP1020
 1021 PESPYELSLR GIPPSGEPSA PLIYQGIMDK DGEKPGKPLA PPRLGKLTVT DVTSDSLLLH1080
 1081 WTVPEGEFDS FVIQYKDRDR PQVVPVEGPQ RSALISNLDV GRKYKFVLYG LVGKKRHGPL1140
 1141 VAEAKILSQT DPSPVTPPRL GNLWVTDPTP DSLHLSWTVP EGQFDSFMVQ YRDRAGRPQV1200
 1201 VPVEGPDRSV IISPLDPDHK YRFTLFGIAN KNRHGPLTAD GTTAPEKKEE PRHPEPPERP1260
 1261 LLGELTVAGA TADSLRLSWT VAQGSFDSFV VQYKDAQGRP QAVPVTGDEN EVAIPSLEPD1320
 1321 RKYKMNLYGL HGRQRVGPVS VVATTAPQEV LDETPSATEM EETPSPTEPS TKAPESPEKP1380
 1381 LLGELMVTGS SPDSLSLSWT IPQGHFDSFT VQYRDGDGQP RVMRVPGDED GVTISGLEPD1440
 1441 HKYKMNLYGF HDRQRVGPMS VIGVTTAEEE TPSPTEMEET PSPTEVEETP SPMEPSTEAP1500
 1501 EPAEEPLLGE LTVTGSSPDS LSLSWTVPQG HFDSFTVQYK GRDGPQVVRV RGEETEVTIG1560
 1561 GLEPGRKYKM NLYGLHGGQR SGPVSTVGVT APQAEETPPA TEPPKEPRLG ELTVTDVTPN1620
 1621 SVGLEWTVSE GQFDSFMVQY KDRDGQSHVV PVAADQREAT VSGLEPERKY RMNVYGLHGG1680
 1681 QRVGPLSVVA LTAPVPPDPV TEPPVEPRLG ELTVTDVTPD SVGLSWTVAE GEFDSFLVQY1740
 1741 KDRDGQPQVV PVATDQREVT IPGLEPSRKY KFLLFGIQDG KRRSTVSVEA KTVGRGDASP1800
 1801 GAPPRLGELW VTDPTPDSLR LSWTVPEGHF DSFVVQFKDR DGPRVVSVEG HERSVTISPL1860
 1861 DSGRKYRFLV YGLLGKRRHG PLTTEGTTET RRAVDEAGTK RPSKPRLGEE LQVTGVTSNS1920
 1921 VGLSWTVPEG HFDSFVIQYR DRDGQPQVVP VEGSRREVSV SGLDPARRYK LLLYGLSRDK1980
 1981 RVGPISAIAV TEPAPREEIK AEPATFSPPA SEPLLGEVTL EEAAPHSLRL SWTATEGEFD2040
 2041 SFEVQYTDEN GQLQEVNVGG DQHDITISDL ESDHRYLVSL YGFHDGQRVG PAHIEAMTAP2100
 2101 REEDDEPSES LSTTQTPSTA VPEPHIKPRL GELAVTDTTP DSLSLSWTVP EGQFDHFLIQ2160
 2161 YKNGDGQPKV VRVPGDEDEV TISGLEPDHK YKMNLYGFHN RQRMGPVSVI GVTTAEEETP2220
 2221 SPTEMEETPS PTEMEETPSP TEPNTEVPEP PEEPFLEELT VTGSSPDSLS LSWTVPQGHF2280
 2281 DSFTVQYKNG DGQPKVVRVP GHDKGVTISG LEPDHKYKMN LYGFHDRQRV GPVSVIGVTT2340
 2341 AEEETPSPTE VEETPSPTEP STEAPEPPEE PVLGELMVTG SSPDSLSLSW TVPQGHFDSF2400
 2401 TVQYKGRDGP QVVRVGGEET EVTVEGLEPG HKYKMNLYGL HGGRRVGPVS TVAMTAREEE2460
 2461 PPASPPLKPQ LGELTVTDAT PDSLSLSWTV PEGQFDHFLV QYKNGDGQPK AVRVPGDEDG2520
 2521 VTISGLEPDH KYKMNLYGFH DRQRVGPVST VGLTVSEKDQ EMTPAPTDLP TAAPEPPIKP2580
 2581 RLGELVVTDA TPDSLSLSWT VPEGQFDHFL IQYKNGDGQP KAVRVPGDED EVTISGLEPD2640
 2641 HKYKMNLYGF HDRQRMGPVS VIGVTTAEEE TPGPTEMEQT PSPTEVEETP GPTEVEETPS2700
 2701 PTEPSTEAPE PPEEPLLGEL TVTGSSPDSL SLSWTVPQGH FDSFTIQHKG RDGPQVVRVG2760
 2761 GEETEVTIGG LEPGRKYKMN LYGLHSGQRV GPVSTVGVTD PQEVVEETPS PTEPSTEAPE2820
 2821 PPEEPLLGDL TVTGSSPDSL SLSWTVPQGH FDSFTIQYKG RDRPQVVRVG GEETEVTIGG2880
 2881 LEPRHKYKMN LYGLHGGRRV GPVSTVGVTA PDYDAMTTQT PSTSVPEPPT KPRLGEVTVT2940
 2941 DATPDSLSLS WTIPEGQFDH FLVQYKNGDG QPKAVRVPGD EDGVTISGLE PDHKYKMNLY3000
 3001 GFHDHQRVGP VSVIGVTTAE EETPSPTKME ETPSPTEMEE TPSPTEPSTE APEPPEEPLL3060
 3061 GELTVTGSSP DSLSLSWTVP QGHFDSFTVQ YKGRDGPQVV RVGGEETEVT VGGLEPGRKY3120
 3121 KMHLYGLHGG RRVGPASTVG VTASLTTERP LAPRLGELAV AVVTSDTARL SWTVEQGPFD3180
 3181 SFLVQYKDVQ GQPQAVPVAG DLREVTVSSL APGRKYKFLL FGLRDEKRHG PVSADAKTLP3240
 3241 DTKPAPRLGE LTVTDVTPGS VGLSWTVPEG EFDSFMVQYK DRDGQPRVVP VAADQREVTV3300
 3301 PGLEPNRKYK FLLYGLVGRK RLGPISAEGS TAPLEKERQP PPRLGELTVT DETPNSLRLS3360
 3361 WTVAQGRFDS FVVQYRGTDG QPRMVPVAAD QREFTVEGLE PGRKYKFLLY GLLGGQRLGP3420
 3421 ASVLGMTAPE EDTPAPWHAA TEAPKPPEGP RLGVLAVRDV SPDSLRLSWS VVQGPFDSFV3480
 3481 VQYQDTDGQP QALLVGGDQN KVLVSGLEPS TSYEFFLYGL HEGKRLGPVS AEGTTGPVPA3540
 3541 GQTPGEPGPR LSHLSVTDVT TSSLRLNWEA PPEAFDSFLL RFGVPSPSTL EPQLRPLLQR3600
 3601 ELTVPGTRRS AVLRDLHPGT LYTLTLYGLR GPHKADSIQG TARTLSPVLE SPRDLQFSEI3660
 3661 RETSARVSWT PPTSRVDGFK VSYQLADGGE PQSVQVDGRT QKLEGLIPGA QYEVTVVSVR3720
 3721 GFEESEPLTG FLTTVPDGPT HLRALNLTDE SALLHWKPPQ TPVDTYDVKV TAPGAPSLQA3780
 3781 SAPGSAVDYP LQGLVTHTNY TATLRGLRGP NFTSPASITF TTGLEAPQDL EAKEVTPRTA3840
 3841 LLTWTAPEVS PTGYLLSFNT PGGQTQEILL PGGVTSHQLR GLFPSTPYST WLRAMWGDSF3900
 3901 TPPVSTSFTT GGLRIPFPRD CGEEMQNGVS TSRTTTIFLN GNRERPLNVF CDMETDGGGW3960
 3961 LVFQRRMDGK TDFWRDWEDY AHGFGNISGE FWLGNEALHS LTKAGDYSLR VDLRAGDEAV4020
 4021 FAQYDSFQVD SADEYYRLHL EGYHGTAGDS MSYHSGSVFS ARDRDPNNLL ISCAVSYRGA4080
 4081 WWYRNCHYAN LNGLYGSTVD HQGVSWYYWK GFDFSVPFTE MKLRPRSYRP LGRGG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle