YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27807095, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.52
Transmembrane Helix	26	49	0.85
Cytoplasmic	50	64	0.45
Transmembrane Helix	65	97	0.72
Non-Cytoplasmic	98	104	0.64
Transmembrane Helix	105	126	0.88
Cytoplasmic	127	140	0.89
Transmembrane Helix	141	160	0.86
Non-Cytoplasmic	161	176	0.67
Transmembrane Helix	177	200	0.86
Cytoplasmic	201	207	0.73
Transmembrane Helix	208	228	0.88
Non-Cytoplasmic	229	273	0.95
Transmembrane Helix	274	293	0.92
Cytoplasmic	294	311	0.83
Transmembrane Helix	312	330	0.90
Non-Cytoplasmic	331	382	0.92
Transmembrane Helix	383	405	0.89
Cytoplasmic	406	422	0.92
Transmembrane Helix	423	444	0.92
Non-Cytoplasmic	445	455	0.85
Transmembrane Helix	456	477	0.90
Cytoplasmic	478	484	0.87
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.91
Transmembrane Helix	526	548	0.92
Cytoplasmic	549	639	0.99
Transmembrane Helix	640	662	0.89
Non-Cytoplasmic	663	664	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSTWSPPA TATAEPLPPY ERIRNAADIS VIVIYFVVVM AVGLWAMFST NRGTVGGFFL  60
   61 AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAAAGIATGG FEWNALILVV VLGWVFVPIY 120
  121 IKAGVVTMPE YLRKRFGGQR IQVYLSVLSL VLYIFTKISA DIFSGAIFIN LALGLDLYLA 180
  181 IFILLAITAL YTITGGLAAV IHTDTLQTVI MLLGSFILTG FAFHEVGGYG AFVTKYMNAI 240
  241 PTVTSYGNTT IKAECYTPRA DSFHIFRDPL KGDLPWPGLI FGLTIISLWY WCTDQVIVQR 300
  301 CLSAKNMSHV KAGCIMCGYL KLLPMFLMVM PGMISRILFT EKVACTVPSE CEKYCGTKVG 360
  361 CTNIAYPTLV VELMPNGLRG LMLSVMLASL MSSLTSIFNS ASTLFTMDIY TKIRKKASEK 420
  421 ELMIAGRLFM LVLIGVSIAW VPIVQSAQSG QLFDYIQSIT SYLGPPIAAV FLLAIFCKRV 480
  481 NEPGAFWGLI IGFLIGVSRM ITEFAYGTGS CMEPSNCPTI ICGVHYLYFA IILFVITIIV 540
  541 ILAVSLFTKP IADVHLYRLC WSLRNSKEER IDLDAEDEDV QDAREDALEI DTEASEEKKG 600
  601 CFRRAYDMFC GLDQQKAPKM TKEEEAAMKL KMTDTSENRL WRMVVNINGI ILLAVAVFCH 660
  661 AYFA