YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23503034
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.18
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	339	0.65
Transmembrane Helix	340	354	0.18
Cytoplasmic	355	497	0.52
Transmembrane Helix	498	518	0.91
Non-Cytoplasmic	519	527	0.48
Transmembrane Helix	528	552	0.73
Cytoplasmic	553	567	0.50
Transmembrane Helix	568	587	0.88
Non-Cytoplasmic	588	613	0.62
Transmembrane Helix	614	637	0.88
Cytoplasmic	638	672	0.44
Transmembrane Helix	673	697	0.81
Non-Cytoplasmic	698	723	0.41
Transmembrane Helix	724	744	0.57
Cytoplasmic	745	747	0.28
Transmembrane Helix	748	768	0.70
Non-Cytoplasmic	769	1498	0.65
Transmembrane Helix	1499	1521	0.87
Cytoplasmic	1522	1549	0.55
Transmembrane Helix	1550	1569	0.74
Non-Cytoplasmic	1570	1583	0.58
Transmembrane Helix	1584	1607	0.78
Cytoplasmic	1608	1642	0.80
Transmembrane Helix	1643	1661	0.79
Non-Cytoplasmic	1662	1667	0.69
Transmembrane Helix	1668	1691	0.88
Cytoplasmic	1692	1741	0.88
Transmembrane Helix	1742	1763	0.74
Non-Cytoplasmic	1764	1774	0.79
Transmembrane Helix	1775	1795	0.95
Cytoplasmic	1796	1811	0.89
Transmembrane Helix	1812	1832	0.92
Non-Cytoplasmic	1833	1838	0.77
Transmembrane Helix	1839	1859	0.90
Cytoplasmic	1860	1878	0.88
Transmembrane Helix	1879	1901	0.91
Non-Cytoplasmic	1902	1931	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPARPAEG MDPQTPGAGG AGPSSLTRRP SRSAATTTFS MEVFDNEVVP SSLQSIAPIL  60
   61 RVAREIQNER PRVAYLCRFY AFEKAHRLDP TSSGRGVRQF KTNLFQRLER DNASSLASRV 120
  121 KKTDAREIES FYKQYYEQYV VSLNKGEQAD RAQLGKAYQT AGVLFEVLCA VNKSEKVEEV 180
  181 APEIIAAAND VQAKKEIYAP YNILPLDSAG ASQSIMQLEE VKAAVSALSN TRGLNWPASF 240
  241 EQQRQKAGEL DVLDWLRAMF GFQRDNVRNQ RENLILLLAN IHIRLIPKAE PLNKLDDRAV 300
  301 DALMNKLFKN YKTWCKYLGK KHSLRLPQAP QEAQQRKILY MGLYLLIWGE AANIRFMPEC 360
  361 LCYIFHNMAY ELHGLLAGNV SIVTGENIKP SYGGDDESFL RKVITPIYRV IDKEAKKSKN 420
  421 GKAPYSTWCN YDDLNEFFWS QDCFSLGWPM RDDGDFFKST RDTTQGKGAS TKKPGKMGKS 480
  481 YFVETRSFWH IFRSFDRLWT FFLLALQAMV IFAWSDISVL DIFRKDSLYN LSSIFITAAF 540
  541 LRFLQSILDL VLNFPGYHRW KFTDVLRNVL KIIVSLAWSI ILPLFYVQES NSELFTKIRN 600
  601 SLTFLDKMKG IPPLYLMAVA VYLLPNLLTA ALFIFPMLRR WIENSDWLVV RFLLWWSQPR 660
  661 IYVGRGMHES QFALIKYTLF WVLLLCAKFA FSYFIQIKPL IKPTKMIMDI NRVQYAWHEF 720
  721 FPDARSNYGA VLSLWAPVIL VYFMDAQIWY AIFSTLCGGV IGAFDRLGEI RTLDMLRSRF 780
  781 QSLPGAFNSY LVPSDKTDKK GFSLSKSFNE VSPSKRSEAA KFAQLWNEFI CSFREEDLIS 840
  841 DREMDLLLVP YSSDPSLKVI QWPPFLLASK IPIALDMASQ FRSRDADLWK RICADEYMKC 900
  901 AVIECYESFK LVLNALVVGE TEKRIIGIII KEVENNISKS TFLANFRTGP LQNPCTKFVD 960
  961 LLEILRDGDP SKRNNVVIAL QDMLEIVTRD MMVNEIGELV ELGHNGRDSG KQLFANTDSR1020
 1021 TAIAFPPPVT AQWEEQIRRL YLLLTVRESA VEVPTNLEAR RRIHFFTNSL FMEMPRAPRV1080
 1081 RKMLSFSVMT PYYSEETVYS KGDLEMENED GVSIIYYLQK IYPDEWNNFM ERLGCKKESE1140
 1141 VWENDENILQ LRHWASLRGQ TLCRTVRGMM YYRRALKLQA FLDMASEGEI LEGYKAVTVP1200
 1201 SEEDKKSQRS LYAQLEAVAD MKFTYVATCQ NYGNQKRNGD RRATDILNLM VNNPSLRVAY1260
 1261 IDEVEEREGG KAQKVYYSVL VKAVDNLDQE IYRIKLPGAA KIGEGKPENQ NHAIIFSRGE1320
 1321 ALQTIDMNQD NYLEEALKMR NLLEEFNEDH GVRPPTILGV REHIFTGSVS SLAWFMSNQE1380
 1381 TSFVTIGQRV LARPLKVRFH YGHPDVFDRI FHITRGGISK SSRGINLSED IFAGFNSTLR1440
 1441 RGNITHHEYI QVGKGRDVGL NQISLFEAKV ACGNGEQTLS RDVYRLGHRF DFFRMLSCYF1500
 1501 TTTGFYISSM LVVLTVYAFL YGKLYLALSG LEQSIVKVAR SKGDDALKAA MASQSVVQLG1560
 1561 LLMALPMVME IGLERGFRTA AGDIIIMNLQ LAAVFFTFSL GTKLHYFGRT ILHGGAKYRA1620
 1621 TGRGFVVRHE KFAENYRMYS RSHFTKALEI LILLVAYQIY GTAVTDSVAF LLLSGSMWFL1680
 1681 VVSWLFAPFL FNPSGFEWQK IVDDWEDWAK WISNHGGIGV PATKSWESWW DEEQEHLQYS1740
 1741 GLIGRFCEIL LSLRFLLFQY GIVYQLNVAN NDKGIIVYGL SWLVIVFVMV VLKIVSMGRK1800
 1801 KFSADFQLMF RLLKLFLFIG FIVTLVVLFK FLSLTVGDIF ASLLAFLPTG WALLQIAQAC1860
 1861 RPVVKGIGMW GSVKALARGY EYLMGLVIFA PVAVLAWFPF VSEFQTRLLF NQAFSRGLQI1920
 1921 QRILAGGKKH K