YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238631, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.78
Transmembrane Helix	21	39	0.84
Non-Cytoplasmic	40	51	0.80
Transmembrane Helix	52	73	0.87
Cytoplasmic	74	83	0.88
Transmembrane Helix	84	103	0.94
Non-Cytoplasmic	104	110	0.86
Transmembrane Helix	111	134	0.88
Cytoplasmic	135	154	0.85
Transmembrane Helix	155	176	0.95
Non-Cytoplasmic	177	183	0.88
Transmembrane Helix	184	203	0.95
Cytoplasmic	204	229	0.92
Transmembrane Helix	230	251	0.90
Non-Cytoplasmic	252	270	0.83
Transmembrane Helix	271	289	0.96
Cytoplasmic	290	297	0.89
Transmembrane Helix	298	318	0.94
Non-Cytoplasmic	319	326	0.84
Transmembrane Helix	327	349	0.91
Cytoplasmic	350	359	0.87
Transmembrane Helix	360	383	0.87
Non-Cytoplasmic	384	392	0.89
Transmembrane Helix	393	412	0.96
Cytoplasmic	413	419	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELTRTKKI RSIIAASSGN LVEWFDFYIY AFTATYFAHT FSTSDNPVIQ QINAFGVFAA  60
   61 GFFMRPIGSW LFGSLADKVG RKKSMVISVV LMALGSFMIA ALPSKDTVGD LAIILLLIAR 120
  121 LIQGLSVGGE YGIAATYLSE LATEGKRGFY SSFQYVTLIG GQLLAVASIS IMFLFFSIDD 180
  181 MKDYAWRILF VIGGILALGS LFVRKMMNES ATKLHQHEDR GTLKALCKSW KPFLMVLGVT 240
  241 SGGSLAFYTI TTYTKTFMEN TGMDKMLVNN LFLGALFILM IIQPLFGYIG DKIGHKRSLI 300
  301 VFCILALVGI YPIFSLIANN AQNNPSLTFM LVVLLFVILS FYTSVAGIFK AKLFPEHVRA 360
  361 LGTGLGYAIS NAVFGGSAPW VALQFKNAGI ENGFFIYIAI FTIIMLIATL CLPKKSELN