YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSTT_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	31	0.94
Non-Cytoplasmic	32	41	0.82
Transmembrane Helix	42	67	0.81
Cytoplasmic	68	80	0.91
Transmembrane Helix	81	103	0.94
Non-Cytoplasmic	104	144	0.95
Transmembrane Helix	145	164	0.90
Cytoplasmic	165	184	0.90
Transmembrane Helix	185	207	0.85
Non-Cytoplasmic	208	215	0.81
Transmembrane Helix	216	239	0.92
Cytoplasmic	240	248	0.79
Transmembrane Helix	249	267	0.68
Non-Cytoplasmic	268	289	0.63
Transmembrane Helix	290	313	0.82
Cytoplasmic	314	324	0.58
Transmembrane Helix	325	350	0.86
Non-Cytoplasmic	351	407	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSKIIQSYA KGNLIVQICI GIALGILIGI SSKEISEIAN LLGILFTSAL KAIAPMLVFI  60
   61 LILTSICTKD FSQSGAKIKN IIILYIVGTF FASACAVLAN FFFPVKLVLD GVQTATNSSP 120
  121 THMSDIFKDL LFKIVDNPIN ALSSGNYLGI LTWAIAGGIA LKHCSNEAKQ VFIDINEGVL 180
  181 KIVKFVVKLA PFGIFGLVAN SVAQTGAQGL LSYVKLLILL VATMLFVTFV INALIVFFYT 240
  241 RKNPFPLIFI CLRHSAFFAF FTRSSAANIP VNMALCAKLG IDKEFYGISI PLGATINMAG 300
  301 AAVTIAILSL TAANTVGIEI SLLQAFLLSI IATFAACGAS GVAGGSLLLI PLACSLFNID 360
  361 YDIAMKVVAI GFIIGVIQDS VETALNSSTD VLFTAICSKN ELNYNIK