YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83573786, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGPYRRPLR AALFRRRQKP TQQGKQDNNK DKQGQPGSGN KHTAPYPPLE EYRLTAELKL  60
   61 NLEQLQNIFA KCSDVVRRDF YLGQAVKVAL FYIDGLADKK LIEDTLVRTL QQAPAELARS 120
  121 LAERTRDLTA VMEMVMPMTD VAVVDNMGSL VKHVLNGDTV LILDGFNKGL ALSTRAWEHR 180
  181 AVEEPITESV VRGPRESFIE SLRTNTSLIR RRLKTPSLKM ETVCLGRYTM TNIVITYIED 240
  241 LADPAVVREV RRRLERIQID GVLESAYIEE LIEDNPDSPF PQIDHTERPD KVAAALLEGR 300
  301 VGILIDGTPF ALIVPTVFVQ FLQASEDYYE RYYLSSFLRL ARFVALNIAL LLPAVYVAVT 360
  361 TFHQEMLPTN LLVKVASQRE GIPFPALVEA LLIELTFELL REAGVRLPRP VGQAVSIVGA 420
  421 LVIGEAAVSA SLVSPAMVIV VAMTGISSFA TPSYSMAITL RLLRFIMLIL AGTLGFYGIM 480
  481 LGLLAILVHL NTLRSFGVPY LAPVAPWNFS DFKDVVVRVP RWAMNSRPSQ IGYRDPVRQG 540
  541 AGLKPTPPAS SNPAPERGES

Type	Start	End	Confidence
Cytoplasmic	1	339	0.58
Transmembrane Helix	340	362	0.86
Non-Cytoplasmic	363	381	0.59
Transmembrane Helix	382	400	0.33
Cytoplasmic	401	409	0.57
Transmembrane Helix	410	430	0.67
Non-Cytoplasmic	431	435	0.46
Transmembrane Helix	436	456	0.80
Cytoplasmic	457	464	0.72
Transmembrane Helix	465	488	0.91
Non-Cytoplasmic	489	560	0.80