YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42561929, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKALESNSK SRKETILIKY AIFSRLLVLF LTILWRSLLQ PYDTSAALNP PCLYHKEDSF  60
   61 PFLVANAASR SLENSVVWDS VYFLRITECG YEYEQTYAFL PLLPFFISLL SRTVFAPLVP 120
  121 LIGLRAVMVL SGFTVSNLAF IFAAIYLFRV SVIILKDTEA SFRASIIFCF NPASIFYSSI 180
  181 YSESLYALFS IGGVYHLLSG TSNVGVLWFA LSGCARSNGI LNAGYICFQT MHRAYEALYQ 240
  241 KRRAYLAMQV FIAGFLRCIC ICLPFVAFQA YGYYNICHGH TRDEVRPWCK GRIPLLYNFI 300
  301 QSHYWGVGFL KYFQFKQLPN FLLASPILSL AVCSIMSYMK SRPELFISLG FQATEKEKRS 360
  361 AARLYSLKDA VEPSVKTSTN EGNHDIRQRK PSSKKDVTGT KVAPEKSGYL SADVFPFIVH 420
  421 LSFMVTTAFF IMHVQVATRF LSASPPLYWF ASSLIGSPKH SKWGYLIWSY CAAYILLGTL 480
  481 LFSNFYPFT

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	39	0.90
Non-Cytoplasmic	40	125	0.76
Transmembrane Helix	126	148	0.88
Cytoplasmic	149	159	0.58
Transmembrane Helix	160	181	0.66
Non-Cytoplasmic	182	191	0.55
Transmembrane Helix	192	226	0.61
Cytoplasmic	227	245	0.86
Transmembrane Helix	246	268	0.89
Non-Cytoplasmic	269	317	0.88
Transmembrane Helix	318	339	0.88
Cytoplasmic	340	413	0.89
Transmembrane Helix	414	437	0.78
Non-Cytoplasmic	438	463	0.52
Transmembrane Helix	464	486	0.90
Cytoplasmic	487	489	0.44