YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XYLL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.95
Transmembrane Helix	42	63	0.80
Non-Cytoplasmic	64	92	0.82
Transmembrane Helix	93	115	0.89
Cytoplasmic	116	123	0.85
Transmembrane Helix	124	144	0.91
Non-Cytoplasmic	145	151	0.60
Transmembrane Helix	152	170	0.93
Cytoplasmic	171	186	0.75
Transmembrane Helix	187	204	0.93
Non-Cytoplasmic	205	211	0.75
Transmembrane Helix	212	233	0.90
Cytoplasmic	234	301	0.98
Transmembrane Helix	302	320	0.85
Non-Cytoplasmic	321	342	0.77
Transmembrane Helix	343	365	0.85
Cytoplasmic	366	372	0.89
Transmembrane Helix	373	395	0.92
Non-Cytoplasmic	396	401	0.81
Transmembrane Helix	402	425	0.89
Cytoplasmic	426	436	0.86
Transmembrane Helix	437	456	0.95
Non-Cytoplasmic	457	464	0.73
Transmembrane Helix	465	487	0.94
Cytoplasmic	488	503	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDPEQQQP ISSVSREFGK SSGEISPERE PLIKENHVPE NYSVVAAILP FLFPALGGLL  60
   61 YGYEIGATSC ATISLQSPSL SGISWYNLSS VDVGLVTSGS LYGALFGSIV AFTIADVIGR 120
  121 RKELILAALL YLVGALVTAL APTYSVLIIG RVIYGVSVGL AMHAAPMYIA ETAPSPIRGQ 180
  181 LVSLKEFFIV LGMVGGYGIG SLTVNVHSGW RYMYATSVPL AVIMGIGMWW LPASPRWLLL 240
  241 RVIQGKGNVE NQREAAIKSL CCLRGPAFVD SAAEQVNEIL AELTFVGEDK EVTFGELFQG 300
  301 KCLKALIIGG GLVLFQQITG QPSVLYYAPS ILQTAGFSAA GDATRVSILL GLLKLIMTGV 360
  361 AVVVIDRLGR RPLLLGGVGG MVVSLFLLGS YYLFFSASPV VAVVALLLYV GCYQLSFGPI 420
  421 GWLMISEIFP LKLRGRGLSL AVLVNFGANA LVTFAFSPLK ELLGAGILFC GFGVICVLSL 480
  481 VFIFFIVPET KGLTLEEIEA KCL