YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47569241, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	299	0.58
Transmembrane Helix	300	321	0.90
Cytoplasmic	322	329	0.54
Transmembrane Helix	330	354	0.85
Non-Cytoplasmic	355	370	0.52
Transmembrane Helix	371	396	0.85
Cytoplasmic	397	413	0.54
Transmembrane Helix	414	434	0.91
Non-Cytoplasmic	435	450	0.49
Transmembrane Helix	451	473	0.81
Cytoplasmic	474	491	0.40
Transmembrane Helix	492	516	0.83
Non-Cytoplasmic	517	527	0.43
Transmembrane Helix	528	547	0.49
Cytoplasmic	548	553	0.72
Transmembrane Helix	554	576	0.87
Non-Cytoplasmic	577	592	0.81
Transmembrane Helix	593	613	0.95
Cytoplasmic	614	618	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITELLKRD TVIMNLTASN KKAVIDELVE KLNGANRLNS KAEFKEAILK RESQSTTGIG  60
   61 EGIAIPHAKT KAVKQPAICF GRSVSGINYE SLDGQPAHLF FMIAASEGAN NTHLETLSRL 120
  121 STLLMDEGFR KQLLEAKDEE ELLRLFDEKE NEKEEEVEVA QPEGNEPYVL AVTACPTGIA 180
  181 HTYMAADSLK AKAAELGIAI KVETNGSTGI KNGLTKEDIE RATAIIVAAD KQVEMNRFAG 240
  241 KHVIQVPVAD GIRKTEKLLN RAVKQDAPIF KGIKEDGKTE STEKEKGLGI YKHLMSGVSN 300
  301 MLPFVVGGGI LIALAFWVGG IKAEGPLAEL LMSIGGGGTG AFLFLVPILA GFIASSIADR 360
  361 PGFMPGVVGG FLAAHANAGF LGGLIAGFLA GYVVLGLKRL FSGLPVQLEG IKPVLLYPVF 420
  421 GLLITGVVMQ KVVIPPVVAL NEMLTGWLNG LNGTNAILLG LILGGMMAID MGGPINKAAF 480
  481 TFGIAAIEAQ NFGVHSAVMA GGMVPPLAIA FATTFFKSKF TEAERKSGLT NYIMGASFIT 540
  541 EGAIPFAAAD PVRVIVSCVV GSSIAGALSM LFQITLPAPH GGLFVIALVN KPVLYIFSIL 600
  601 IGAVVSALMM GIWKKKVK