YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.94
Transmembrane Helix	38	59	0.85
Non-Cytoplasmic	60	69	0.80
Transmembrane Helix	70	92	0.80
Cytoplasmic	93	109	0.72
Transmembrane Helix	110	132	0.93
Non-Cytoplasmic	133	148	0.89
Transmembrane Helix	149	167	0.91
Cytoplasmic	168	180	0.78
Transmembrane Helix	181	205	0.89
Non-Cytoplasmic	206	211	0.81
Transmembrane Helix	212	233	0.92
Cytoplasmic	234	254	0.92
Transmembrane Helix	255	278	0.63
Non-Cytoplasmic	279	291	0.64
Transmembrane Helix	292	316	0.68
Cytoplasmic	317	331	0.75
Transmembrane Helix	332	355	0.90
Non-Cytoplasmic	356	375	0.79
Transmembrane Helix	376	397	0.86
Cytoplasmic	398	406	0.69
Transmembrane Helix	407	429	0.88
Non-Cytoplasmic	430	435	0.75
Transmembrane Helix	436	460	0.89
Cytoplasmic	461	483	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDPLLLGDN QIITGSLKPT PTWRMNFTAE LKNLSRMALP MATVTVAQYL LPVISVMVAG  60
   61 HRSELQLSGV ALATSFTNVS GFSVMFGLAG ALETLCGQAY GAKQYAKIGT YTFSAIVSNV 120
  121 PIVVLISILW FYMDKLFVSL GQDPDISKVA GSYAVCLIPA LLAQAVQQPL TRFLQTQGLV 180
  181 LPLLYCAITT LLFHIPVCLI LVYAFGLGSN GAALAIGLSY WFNVLILALY VRFSSSCEKT 240
  241 RGFVSDDFVL SVKQFFQYGI PSAAMTTIEW SLFEFLILSS GLLPNPKLET SVLSICLTTS 300
  301 SLHYVIPMGI GAAGSIRVSN ELGAGNPEVA RLAVFAGIFL WFLEATICST LLFICRDIFG 360
  361 YAFSNSKEVV DYVTELSPLL CISFLVDGFS AVLGGVARGS GWQHIGAWAN VVAYYLLGAP 420
  421 VGLFLGFWCH MNGKGLWIGV VVGSTAQGII LAIVTACMSW NEQAAKARQR IVVRTSSFGN 480
  481 GLA