YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAX5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.94
Transmembrane Helix	75	93	0.76
Non-Cytoplasmic	94	98	0.67
Transmembrane Helix	99	117	0.58
Cytoplasmic	118	128	0.43
Transmembrane Helix	129	151	0.74
Non-Cytoplasmic	152	162	0.52
Transmembrane Helix	163	186	0.89
Cytoplasmic	187	197	0.56
Transmembrane Helix	198	220	0.89
Non-Cytoplasmic	221	231	0.57
Transmembrane Helix	232	252	0.93
Cytoplasmic	253	287	0.62
Transmembrane Helix	288	309	0.88
Non-Cytoplasmic	310	318	0.49
Transmembrane Helix	319	342	0.81
Cytoplasmic	343	353	0.57
Transmembrane Helix	354	379	0.86
Non-Cytoplasmic	380	386	0.57
Transmembrane Helix	387	406	0.94
Cytoplasmic	407	412	0.58
Transmembrane Helix	413	433	0.90
Non-Cytoplasmic	434	441	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCCKVPALI QAQVEMGLVN DVEHKSLFRR DTDSPERKAA SLMEQGSLSA SFRECSTKTP  60
   61 NNSVLQSFKI VILSNKLNLL LPFGPLAILL HYLTDNKGWI FLLSLVGITP LAERLGYATE 120
  121 QLACYTGSTV GGLLNATFGN VTELIISIFA LKSGMIRVVQ LTLLGSILSN MLLVLGCAFF 180
  181 CGGLVFSQKE QVFDKGNAVV NSGLLLMAVM GLLFPAVLHY THSEVHAGSS ELALSRFSSC 240
  241 IMLVAYAAYL FFQLKSQPSS YTPLTEETNQ NEETSDDDED PEISKWEAII WLSILTAWVS 300
  301 LLSGYLVDAI EGASVSWKIP ISFISVILLP IVGNAAEHAG AIMFAMKDKL DLSLGVAIGS 360
  361 SIQISMFAVP FCVVIGWMMG AQMDLNFQLF ETATLFITVI VVAFFLQEGT SNYFKGLMLI 420
  421 LCYLIVAASF FVHEDPHQDD I