YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30313359
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.90
Transmembrane Helix	44	68	0.82
Non-Cytoplasmic	69	79	0.77
Transmembrane Helix	80	97	0.64
Cytoplasmic	98	117	0.63
Transmembrane Helix	118	135	0.41
Non-Cytoplasmic	136	140	0.51
Transmembrane Helix	141	161	0.78
Cytoplasmic	162	176	0.49
Transmembrane Helix	177	196	0.67
Non-Cytoplasmic	197	219	0.80
Transmembrane Helix	220	241	0.90
Cytoplasmic	242	251	0.85
Transmembrane Helix	252	272	0.94
Non-Cytoplasmic	273	283	0.79
Transmembrane Helix	284	306	0.90
Cytoplasmic	307	316	0.86
Transmembrane Helix	317	336	0.87
Non-Cytoplasmic	337	359	0.68
Transmembrane Helix	360	382	0.76
Cytoplasmic	383	392	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYIGAHGAA ALHRYKYSGE DHSYLAKYLL NPFWTRFVKV FPLWMPPNMI TLMGFMFLVT  60
   61 SSLLGYIYSP QLDSPPPRWV HFAHGLLLFL YQTFDAVDGK QARRTNSSSP LGELFDHGCD 120
  121 ALACAFEAMA FGSTAMCGRD TFWFWVISAI PFYGATWEHY FTNTLILPVI NGPTEGLALI 180
  181 YVSHFFTALC GSEWWAQQLG ESIPLFSWVP FVNAIQTSRA VLYMMIAFAV IPTVAINVSN 240
  241 VYKVVQSRKG SMVLALAMLY PFVVLLGGVL IWDYLSPINL IETYPHLVVL GTGLAFGFLV 300
  301 GRMILAHLCD EPKGLKTNMC TSLVYLPFAL ANALTARLNN GVPLVDELWV LLGYCIFTVS 360
  361 LYLHFATSVI HEITAALGIY CFRITKKLEK KP