YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BOR3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.46
Transmembrane Helix	35	57	0.74
Cytoplasmic	58	67	0.57
Transmembrane Helix	68	98	0.68
Non-Cytoplasmic	99	124	0.66
Transmembrane Helix	125	149	0.86
Cytoplasmic	150	155	0.71
Transmembrane Helix	156	177	0.83
Non-Cytoplasmic	178	196	0.86
Transmembrane Helix	197	218	0.93
Cytoplasmic	219	235	0.85
Transmembrane Helix	236	256	0.84
Non-Cytoplasmic	257	290	0.79
Transmembrane Helix	291	312	0.93
Cytoplasmic	313	332	0.76
Transmembrane Helix	333	354	0.87
Non-Cytoplasmic	355	466	0.69
Transmembrane Helix	467	483	0.67
Cytoplasmic	484	489	0.43
Transmembrane Helix	490	509	0.34
Non-Cytoplasmic	510	549	0.51
Transmembrane Helix	550	577	0.82
Cytoplasmic	578	732	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEAESFVPF QGIKKDVKGR LNCYKQDWIS GLRAGFRILA PTTYIFFASA IPVITFGEQL  60
   61 ERDTDGKITA VQTLVSTALC GVIHSIIGGQ PLLILGVAEP TVIMYTFMFN FAKSRTDLGS 120
  121 NLFLAWTGWV CLWTGLLLFL LAVLGACTFI NRFTRLAGEL FGILIAMLFM QEAIRGIVDE 180
  181 FGVPGRTNPR SAEFQPAWVF ANGMFGLVLS SGLLYTGLKS RKARSWRFGA EWLRGFIADY 240
  241 GVPVMVVVWT CISYIPWKSV PQGIPRRLVS PNPWSPGAYQ NWTVIKEMVD VPVLYILLAV 300
  301 VPASMIAVLY YFDHSVASQL AQQEDFNLRK PPAYHYDLFL LGFLTILCGL IGIPPSNGVI 360
  361 PQSPMHTKSL ATLNHQLLRN KLVAAARKCI RNNATIGEVY GSMEEAYQQM QSPLIHQEPS 420
  421 RIQGLKQSHI QKASNADALV DETVFDIETE VENILPVEVK EQRVSNFLQA MMVAGCVAAM 480
  481 PLIKRIPSSV LWGYFAYMAI ESLPGNQFWE RIVLLFTAPS RRFKVLEDNH AVFIETVPFK 540
  541 TMAMFTLFQT AYLLVCFGIT WVPVAGVLFP LMIMFLVPVR QYVLPNFFKG AHLQDLDAAE 600
  601 YEEAPAILSF NLKPEGEVSR ATSFADSGEV MDGMFTRSRG EIRKVSSLKL GGGGSGSTVG 660
  661 SPAGGGVELM RRVVSFQNPR VSEKVYIRSL SDFRGGGEIS PRSSAGRAPF SPRSATGGGG 720
  721 GEQRLSNLGK SV