YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23308179, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGALMEEK RRATTSSSSS QVHMSNDIDW QMLDKSRFFF LGAALFSGVS TALYPIVVLK  60
   61 TRQQVSPTRV SCANISLAIA RLEGLKGFYK GFGTSLLGTI PARALYMTAL EITKSSVGQA 120
  121 TVRLGLSDTT SLAVANGAAG LTSAVAAQTV WTPIDIVSQG LMVQGDVSLS KHLPGVMNSC 180
  181 RYRNGFDAFR KILYTDGPRG FYRGFGISIL TYAPSNAVWW ASYSLAQKSI WSRYKHSYNH 240
  241 KEDAGGSVVV QALSAATASG CSALVTMPVD TIKTRLQVLD AEENGRRRAM TVMQSVKSLM 300
  301 KEGGVGACYR GLGPRWVSMS MSATTMITTY EFLKRLATKK QK

Type	Start	End	Confidence
Cytoplasmic	1	37	0.71
Transmembrane Helix	38	58	0.93
Non-Cytoplasmic	59	342	0.62