YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIPL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.92
Transmembrane Helix	14	36	0.90
Cytoplasmic	37	55	0.92
Transmembrane Helix	56	76	0.92
Non-Cytoplasmic	77	82	0.79
Transmembrane Helix	83	105	0.90
Cytoplasmic	106	124	0.93
Transmembrane Helix	125	145	0.92
Non-Cytoplasmic	146	149	0.71
Transmembrane Helix	150	167	0.86
Cytoplasmic	168	173	0.70
Transmembrane Helix	174	193	0.89
Non-Cytoplasmic	194	257	0.91
Transmembrane Helix	258	279	0.91
Cytoplasmic	280	300	0.93
Transmembrane Helix	301	322	0.94
Non-Cytoplasmic	323	328	0.82
Transmembrane Helix	329	346	0.92
Cytoplasmic	347	372	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLWTLLYL LEPAPATLIV TAVTVTFASA FRALNYGKEM ERNRDFSEAS ITLDSSQALM  60
   61 IPVMSSCSLL LMFYLFSSVS QLLTAFTAIA SVSSLFYWLS PYAVYMKTQL GLSDPFLSRC 120
  121 CSKSFTRIQG LLLVACAMTV VAWLISGHWV LNNLLGISIC IAFVSHVRLP NIKICAMLLV 180
  181 CLFVYDIFWV FFSERFFGAN VMVAVATQQA SNPVHTVANS LNLPGLQLIT KKLELPVKIV 240
  241 FPRNLLGGVV PGVSASDFMM LGLGDMAIPA MLLALVLCFD HRKTRDVVNI FDLKSSKGHK 300
  301 YIWYALPGYA IGLVAALAAG VLTHSPQPAL LYLVPSTLGP VIFMSWRRKD LAELWEGPAL 360
  361 SNPIEKSHEI EI