YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126943862, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	25	0.97
Non-Cytoplasmic	26	44	0.92
Transmembrane Helix	45	67	0.91
Cytoplasmic	68	84	0.91
Transmembrane Helix	85	105	0.94
Non-Cytoplasmic	106	133	0.96
Transmembrane Helix	134	155	0.91
Cytoplasmic	156	183	0.90
Transmembrane Helix	184	205	0.91
Non-Cytoplasmic	206	221	0.91
Transmembrane Helix	222	244	0.89
Cytoplasmic	245	253	0.88
Transmembrane Helix	254	275	0.94
Non-Cytoplasmic	276	313	0.95
Transmembrane Helix	314	333	0.93
Cytoplasmic	334	341	0.87
Transmembrane Helix	342	366	0.88
Non-Cytoplasmic	367	395	0.92
Transmembrane Helix	396	419	0.87
Cytoplasmic	420	437	0.86
Transmembrane Helix	438	457	0.94
Non-Cytoplasmic	458	464	0.76
Transmembrane Helix	465	487	0.93
Cytoplasmic	488	507	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTNVFWG SGFLVLLAVL FGAFLPEQFE TFTNHIQKFL TSNFGWYYLI VVAIIIIFCL  60
   61 FLVLSPIGSI RLGKPGEEPG YSNKSWFAML FSAGMGIGLV FWGAAEPLSH YAVQAPGGEV 120
  121 GTQAAMKDAL RYSFFHWGIS AWSIYAIVAL ALAYFKFRKN APGLISATLY PILGKHAKGP 180
  181 IGQLIDIIAV FATVIGVATT LGLGAQQING GLTYLFGVPN NFTVQFTIIV IVTILFMLSA 240
  241 MSGLDKGIQL LSNVNIYVAG VLLVLTLILG PTLFIMNNFT NSFGDYLQNI IQMSFQTAPD 300
  301 APDARKWIDS WTIFYWAWWL SWSPFVGIFI ARISRGRTIR QFLLGVIVLP ALVSVFWFAV 360
  361 FGGSAIFVEQ HGNSGLSSLA TEQVLFGVFN EFPGGMVLSI VAMILIAVFF ITSADSATFV 420
  421 LGMQTTGGSL NPPNSVKVTW GLLQAGIASV LLYAGGLTAL QNASIIAAFP FSIVIILMIV 480
  481 SLFVSLTREQ EKLGLYVRPK KSQRSKL