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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MSL9_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERRVSNGE EVVINVSDKE DSKDPRASPS FNPLASPDSD AGIEKSKPVP PISIPTPEIY  60
   61 KFSGSVHKPP KIPSPEGLVR RKSLSRSIYS KPKSRFGEQQ SFRYDSTREE NGGRSLREQF 120
  121 GAGSFARGSF DRASPNNKSN RSVASAALSK VAEEEPDENE EIYKKVKLHR VKRSGMKPLA 180
  181 FLELVVFMAI LGALIVSLTI DVVNKHTIWG LEFWKWCVLV MVTLSGMLVT NWFMHFVVFI 240
  241 IEKNYLLRKK VLYFVHGLKK NVQVFIWFSL VLIAWICLFD GDVKRTRKTK RFLDFITWTI 300
  301 VSLLVGSILF LVKTFALKVL ASKFNVRNFF ERIQESVFHQ YVLQTLSGPP LIEEAENVGR 360
  361 VPSTGHLSFT RTKDGKVKDK KVIDMGKVHR MKQEKVSAWT MRVLIEAVGT SGISTISSTL 420
  421 DEVNNKKERT DKEITNEMEA VAAAYDVFNN VAKPNHNYIE EDDLLRFMIK EEVDLVLPLI 480
  481 EDADTGKITR KTFTEWVVNV YTSRKTIGHS LNDTKTAVKQ LDKLITGILT VITFIVWMVL 540
  541 LDIASTKLLL VFSSQFLGLA FMIGSTCKNI FESFMFVFVM HPYDVGDRCV VDGVMLLVEE 600
  601 IDLLTTVFLK IDNEKVFYPN SVLISKPISN FYRSPDMGDY VDFGIAFSTP AEKIGCLKGK 660
  661 IGEYLVANSQ HWYPEAQVMV RAIENMNKLV LNILVQHTIN FQVYVEKSLR RTALIIAIKR 720
  721 ILEDLEIDYT LLPQDVNLTG HK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle