YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.99
Transmembrane Helix	74	98	0.86
Non-Cytoplasmic	99	107	0.83
Transmembrane Helix	108	130	0.86
Cytoplasmic	131	149	0.79
Transmembrane Helix	150	171	0.89
Non-Cytoplasmic	172	201	0.95
Transmembrane Helix	202	221	0.93
Cytoplasmic	222	229	0.76
Transmembrane Helix	230	249	0.94
Non-Cytoplasmic	250	265	0.84
Transmembrane Helix	266	286	0.88
Cytoplasmic	287	299	0.87
Transmembrane Helix	300	322	0.91
Non-Cytoplasmic	323	348	0.92
Transmembrane Helix	349	374	0.85
Cytoplasmic	375	393	0.91
Transmembrane Helix	394	414	0.93
Non-Cytoplasmic	415	422	0.72
Transmembrane Helix	423	446	0.85
Cytoplasmic	447	457	0.94
Transmembrane Helix	458	477	0.96
Non-Cytoplasmic	478	482	0.84
Transmembrane Helix	483	504	0.94
Cytoplasmic	505	511	0.94
Transmembrane Helix	512	534	0.90
Non-Cytoplasmic	535	543	0.75
Transmembrane Helix	544	564	0.92
Cytoplasmic	565	594	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGGGDDGL RRRGCSCTKD DFLPEESFQS MGNYLKALKE TPSRFMDRIM TRSLDSDEIN  60
   61 EMKARSGHEM KKTLTWWDLM WFGIGAVIGS GIFVLTGLEA RNHSGPAVVL SYVVSGVSAM 120
  121 LSVFCYTEFA VEIPVAGGSF AYLRVELGDF MAFIAAGNII LEYVVGGAAV ARSWTSYFAT 180
  181 LLNHKPEDFR IIVHKLGEDY SHLDPIAVGV CAIICVLAVV GTKGSSRFNY IASIIHMVVI 240
  241 LFVIIAGFTK ADVKNYSDFT PYGVRGVFKS AAVLFFAYIG FDAVSTMAEE TKNPGRDIPI 300
  301 GLVGSMVVTT VCYCLMAVTL CLMQPYQQID PDAPFSVAFS AVGWDWAKYI VAFGALKGMT 360
  361 TVLLVGAIGQ ARYMTHIARA HMMPPWLAQV NAKTGTPINA TVVMLAATAL IAFFTKLKIL 420
  421 ADLLSVSTLF IFMFVAVALL VRRYYVTGET STRDRNKFLV FLGLILASST ATAVYWALEE 480
  481 EGWIGYCITV PIWFLSTVAM KFLVPQARAP KIWGVPLVPW LPSASIAINI FLLGSIDTKS 540
  541 FVRFAIWTGI LLIYYVLFGL HATYDTAKAT LKEKQALQKA EEGGVVADNS CSAT