YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AZG2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.98
Transmembrane Helix	110	133	0.82
Non-Cytoplasmic	134	158	0.85
Transmembrane Helix	159	181	0.92
Cytoplasmic	182	191	0.87
Transmembrane Helix	192	211	0.93
Non-Cytoplasmic	212	249	0.92
Transmembrane Helix	250	267	0.86
Cytoplasmic	268	333	0.71
Transmembrane Helix	334	357	0.80
Non-Cytoplasmic	358	373	0.83
Transmembrane Helix	374	397	0.81
Cytoplasmic	398	408	0.83
Transmembrane Helix	409	429	0.92
Non-Cytoplasmic	430	435	0.77
Transmembrane Helix	436	453	0.95
Cytoplasmic	454	463	0.75
Transmembrane Helix	464	481	0.87
Non-Cytoplasmic	482	487	0.46
Transmembrane Helix	488	508	0.75
Cytoplasmic	509	530	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGREKTLCKS WSDMKKHLND TVSKSFIGRF FKLEARKTTF TTELRAATAT FLTMAYIITV  60
   61 NANILADSGA TCSINDCSTV ASSSPPGPEC VLGSNPGYEQ CISRVKKDLV VATSLSAMVG 120
  121 SLAMGLLANL PFGLAPGMGA NAYIAYNVVG FRGSGSISYH TAMAIVLLEG CAFLAVSALG 180
  181 LRGKLARLIP QTVRLACAVG IGMFIAFVGL QMNQGIGLVG PDKSTLVTLT ACAETDPVTG 240
  241 ACLGGKMKSP TFWLAVVGFL ITSFGLMKNV KGSMIYGIVF VTAISWIRGT QVTIFPHTPL 300
  301 GDSNYNYFTK IVDFHKIQST LGAISFTEFR KSEVWVAFAT LFYVDLLGTT GVLYTMAEIG 360
  361 GFVEDGKFEG EYAAYLVDAG SSVVGSALGV TTTATFVESS AGLKEGGKTG LTAVIVGLYF 420
  421 LASMFFTPLV TNVPRWAVGP SLVMVGVMMM GVVKDIRWGE TKEAVTAFVT ILLMPLTYSI 480
  481 ANGIIAGIGI YLALSMYDVV LGVAKWLNGV RKRVMREHNQ VSSVATVEIV