YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST48_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNLSRSVAL ISVFLLPLLS FSFSVDNPTD RRVLVLLDDL SLKSSHSIFF NTLKSRGFDL  60
   61 DFKLAEDSKL ALQRYGQYLY DGLIIFAPST ERFGGSLDSK SIADFVDSGR DLILSADTAA 120
  121 SDLIRGIATE CGVDFDEDSS AMVIDHTSFS VSDVDGDHTL IAADDLVKSD VILGKTKIEA 180
  181 PVLFRGVAHS LNPTNNLVLK VLSASPSAYS ANPSSKLSSP PQLTGSSISL VSVMQARNNA 240
  241 RVVISGSVQL FSDRLIRSGV QKAGSPNQYE KSGNEQFVTE LSKWVFHERG HLKAGNLVHH 300
  301 RVGETDEPAI YRIKDDLEFS VEIYEWSGKS WEPYVANDVQ VQFYMMSPYV LKTLSTDKKG 360
  361 LFHTSFKVPD VYGVFQFKVE YEKLGYTTLS LSKQIPVRPY RHNEYERFIP TAYPYYGACF 420
  421 TTMAGFFVFS FVYLYHK

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	411	0.99
Transmembrane Helix	412	435	0.89
Cytoplasmic	436	437	0.87