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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: OOPDA_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMATPTSRA SLNLLRRSPK PKYFSSSSCH FRPSTFRKSY PCPIWSSSFS FCLPPPRSTT  60
   61 STSLSSSSFR PFSSPPSMSS AAAAAVESVV SDETLSSNPL LQDFDFPPFD SVDASHVRPG 120
  121 IRALLQHLEA ELEELEKSVE PTWPKLVEPL EKIVDRLTVV WGMINHLKAV KDTPELRAAI 180
  181 EDVQPEKVKF QLRLGQSKPI YNAFKAIRES PDWSSLSEAR QRLVEAQIKE AVLIGIALDD 240
  241 EKREEFNKIE QELEKLSHKF SENVLDATKK FEKLITDKKE IEGLPPSALG LFAQAAVSKG 300
  301 HENATAENGP WIITLDAPSY LPVMQHAKNR ALREEVYRAY LSRASSGDLD NTAIIDQILK 360
  361 LRLEKAKLLG YNNYAEVSMA MKMATVEKAA ELLEKLRSAS WDAAVQDMED LKSFAKNQGA 420
  421 AESDSMTHWD TTFWSERLRE SKYDINEEEL RPYFSLPKVM DGLFSLAKTL FGIDIEPADG 480
  481 LAPVWNNDVR FYRVKDSSGN PIAYFYFDPY SRPSEKRGGA WMDEVVSRSR VMAQKGSSVR 540
  541 LPVAHMVCNQ TPPVGDKPSL MTFREVETVF HEFGHALQHM LTKQDEGLVA GIRNIEWDAV 600
  601 ELPSQFMENW CYHRDTLMSI AKHYETGETL PEEVYKKLLA ARTFRAGSFS LRQLKFASVD 660
  661 LELHTKYVPG GPESIYDVDQ RVSVKTQVIP PLPEDRFLCS FSHIFAGGYA AGYYSYKWAE 720
  721 VLSADAFSAF EDAGLDDIKA VKETGQRFRN TILALGGGKA PLKVFVEFRG REPSPEPLLR 780
  781 HNGLLAASAS A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle