YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23296523, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	41	0.90
Non-Cytoplasmic	42	51	0.73
Transmembrane Helix	52	73	0.91
Cytoplasmic	74	82	0.88
Transmembrane Helix	83	103	0.90
Non-Cytoplasmic	104	108	0.73
Transmembrane Helix	109	127	0.78
Cytoplasmic	128	137	0.68
Transmembrane Helix	138	157	0.83
Non-Cytoplasmic	158	161	0.70
Transmembrane Helix	162	181	0.84
Cytoplasmic	182	191	0.74
Transmembrane Helix	192	212	0.88
Non-Cytoplasmic	213	225	0.78
Transmembrane Helix	226	247	0.88
Cytoplasmic	248	256	0.66
Transmembrane Helix	257	279	0.82
Non-Cytoplasmic	280	285	0.76
Transmembrane Helix	286	305	0.95
Cytoplasmic	306	337	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKMSATTS KTDQKAALDI ASWLFNVVTS VGIILVNKAL MATYGFSFAT TLTGLHFGTT  60
   61 TLLTTFLTWL GYIQPSQLPW PDLLKFVLFA NFSIVGMNVS LMWNSVGFYQ IAKLSMIPVS 120
  121 CLLEVMLDNV RYSRDTKLSI LLVLAGVAVC TVTDVSVNLN GFLAAAIAVW STALQQYYVH 180
  181 YLQRKYSLGS FNLLAHTAPV QAASLLLVGP FLDYWLTNQR VDAYNFSFVS LFFLILSCSI 240
  241 AVGTNLSQFI CIGRFTAVSF QVLGHMKTIL VLVLGFTFFG KEGLNLQVVL GMLIAILGMI 300
  301 WYGNASSKPG GKERRSLSIP ITKSQKLSET NESDEKV