YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMP3
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRYQWWLYL VYAIGLMLCL GPSYIHPDEH FQCIEILAMQ FMKVKGTIPW EFKSKFAARS  60
   61 YGPLLLVYGP LFTILESFPE IQDNPALILY SMRLQNYVMY LLCYHFLIPK LIRDERKAVQ 120
  121 FIKKSLLLTS YVTWTYQTHT FSNSIETLAL ISTLTVMEDM VNEKNIQRSN FKNSVILGLI 180
  181 FSFGVFNRVT FPAFIFLPCL ILFWKFYRVH WKSFSLLLLS FSFSSCLFVL IDTNIYNNGK 240
  241 GFVITPLNNL KYNLNVQNLQ VHGLHPRYTH LLVNLPQIVG PVLLLAIFSG YKLDKLSTYA 300
  301 IISGLLFLSF FQHQELRFLV PLVPLLVTNL NWTPLSSTLV NKKIFKGTWL LFNIIMAFIM 360
  361 GISHQAGIIQ FLGDYFHFRT EQMGVHIWWK TYSPPTWMYM SNNLTVSSLI NTQDGIESID 420
  421 EVAFSVGNHH VIDLKGCDLP LLTETIRRLR LNGSITPLTL VTPNSMTSEL KKLKRDGTIN 480
  481 LIPKRNYLFH LDLDHLDFND FTTFKPGLTV YSIELL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.68
Transmembrane Helix	7	26	0.89
Non-Cytoplasmic	27	183	0.62
Transmembrane Helix	184	204	0.85
Cytoplasmic	205	213	0.67
Transmembrane Helix	214	235	0.89
Non-Cytoplasmic	236	267	0.86
Transmembrane Helix	268	288	0.84
Cytoplasmic	289	295	0.68
Transmembrane Helix	296	313	0.76
Non-Cytoplasmic	314	317	0.63
Transmembrane Helix	318	340	0.62
Cytoplasmic	341	348	0.70
Transmembrane Helix	349	369	0.91
Non-Cytoplasmic	370	516	0.77