YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29893528
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.73
Transmembrane Helix	36	57	0.90
Cytoplasmic	58	74	0.68
Transmembrane Helix	75	94	0.89
Non-Cytoplasmic	95	99	0.71
Transmembrane Helix	100	124	0.90
Cytoplasmic	125	134	0.65
Transmembrane Helix	135	155	0.90
Non-Cytoplasmic	156	172	0.68
Transmembrane Helix	173	192	0.85
Cytoplasmic	193	315	0.91
Transmembrane Helix	316	335	0.84
Non-Cytoplasmic	336	363	0.88
Transmembrane Helix	364	386	0.89
Cytoplasmic	387	436	0.96
Transmembrane Helix	437	459	0.89
Non-Cytoplasmic	460	465	0.80
Transmembrane Helix	466	485	0.95
Cytoplasmic	486	545	0.96
Transmembrane Helix	546	569	0.89
Non-Cytoplasmic	570	590	0.84
Transmembrane Helix	591	611	0.86
Cytoplasmic	612	968	0.99
Transmembrane Helix	969	990	0.93
Non-Cytoplasmic	991	1026	0.92
Transmembrane Helix	1027	1049	0.87
Cytoplasmic	1050	1095	0.94
Transmembrane Helix	1096	1129	0.78
Non-Cytoplasmic	1130	1197	0.61
Transmembrane Helix	1198	1220	0.74
Cytoplasmic	1221	1226	0.39
Transmembrane Helix	1227	1247	0.56
Non-Cytoplasmic	1248	1531	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRGFCSAD GSDPLWDWNV TWYTSNPDFT KCFQNTVLVW VPCFYLWACF PFYFLYLSRH  60
   61 DRGYIQMTLL NKTKTALGFL LWIVCWADLF YSFWERSRGI FLAPVFLVSP TLLGITMLLA 120
  121 TFLIQLERRK GVQSSGIMLT FWLVALLCAL AILRSKIMTA LKEDVQVDLF RDITFYVYFS 180
  181 LVLIQLVLSC FSDRSPLFSE TIHDPNPCPE SSASFLSRIT FWWITGLIVR GYRQPLEGSD 240
  241 LWSLNKEDTS EQVVPVLVKN WKKECAKTRK QPVKVVYSSK DPAQPKDSSK VDANEEVEAL 300
  301 IVKSPQKEWN PSLFKVLYKT FGPYFLMSFF FKAIHDLMMF SGPEILKLLI NFVNDTKAPD 360
  361 WQGYFYTALL FVAACLQTLV LHQYFHICFV SGMRIKTAVI GAVYRKALVI TNAARKSSTV 420
  421 GEIVNLMSVD AQRFMDLATY INMIWSAPLQ VILALYLLWR NLGPPILAGV AVMVLMVPVN 480
  481 AVMAMKTKTY QVAHMKSKDN RIKLMNEILN GIKVLKLYAW ELAFKDKVLA IRQEELKVLK 540
  541 KSAYLAAVGT FTWVCTPFLV ALCTFAVYVT IDKNNVLDAQ KAFVSLALFN ILRFPLNILP 600
  601 MVISSIVQAS VSLKRLRIFL SHEELEPDSI ERRPVKDGGD TNSITVRNAT FTWARSDPPT 660
  661 LNGITFSIPE GALVAVVGQV GCGKSSLLSA LLAEMDKVEG HVAIKGSVAY VPQQAWIQND 720
  721 SLQENILFGC QLEEPYYRSV IQACALLPDL EILPSGDRTE IGEKGVNLSG GQKQRVSLAR 780
  781 AVYCNADIYL FDDPLSAVDA HVGKHIFENV IGPKGMLKNK TRILVTHSMS YLPQVDVIIV 840
  841 MSGGKISEMG SYQELLARDG AFAEFLRTYA SAEQEQDPED NGVTGVSGPG KEAKQMENGM 900
  901 LVTDSAGKQL QRQLSSSSSY SGDVSRQHNS TAELQKDGAK KEETWKLMEA DKAQTGQVKL 960
  961 SVYWDYMKAI GLFISFLSIF LFICNHVAAL ASNYWLSLWT DDPIVNGTQE HTKVRLSVYG1020
 1021 ALGISQGIAV FGYSMAVSIG GILASRYLHV DLLHSILRSP MSFFERTPSG NLVNRFSKEL1080
 1081 DTVDSMIPEV IKMFMGSLFN VIGACIVILL ATPIAAIIIP PLGLIYFFVQ RFYVASSRQL1140
 1141 KRLESVSRSP VYSHFNETLL GVSVIRAFEE QERFIHQSDL KVDENQKAYY PSIVANRWLA1200
 1201 VRLECVGNCI VLFAALFAVI SRHSLSAGLV GLSVSYSLQV TTYLNWLVRM SSEMETNIVA1260
 1261 VERLKEYSET EKEAPWQIQE TAPPSNWPQV GRVEFRNYCL RYREDLDFVL RHINVTINGG1320
 1321 EKVGIVGRTG AGKSSLTLGL FRINESAEGE IIIDGINIAR IGLHDLRFKI TIIPQDPVLF1380
 1381 SGSLRMNLDP FSQYSDEEVW TSLELAHLKG FVSALPDKLD HECAEGGENL SVGQRQLVCL1440
 1441 ARALLRKTKI LVLDEATAAV DLETDDLIQS TIRTQFEDCT VLTIAHRLNT IMDYTRVIVL1500
 1501 DKGEIQEYGA PSDLLQQRGL FYNMARDAGL V