YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ECM27
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.63
Transmembrane Helix	21	42	0.85
Non-Cytoplasmic	43	115	0.59
Transmembrane Helix	116	138	0.87
Cytoplasmic	139	151	0.66
Transmembrane Helix	152	172	0.74
Non-Cytoplasmic	173	175	0.62
Transmembrane Helix	176	194	0.83
Cytoplasmic	195	438	0.75
Transmembrane Helix	439	463	0.86
Non-Cytoplasmic	464	469	0.75
Transmembrane Helix	470	491	0.92
Cytoplasmic	492	523	0.94
Transmembrane Helix	524	545	0.92
Non-Cytoplasmic	546	564	0.81
Transmembrane Helix	565	586	0.84
Cytoplasmic	587	606	0.91
Transmembrane Helix	607	638	0.84
Non-Cytoplasmic	639	666	0.93
Transmembrane Helix	667	688	0.92
Cytoplasmic	689	701	0.87
Transmembrane Helix	702	721	0.96
Non-Cytoplasmic	722	725	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWAINVAHP RLLYKDPKLS VTFIVPSLFH IIIAFVLLGI CASDFLCPNV AHISDPNSLR  60
   61 SNGSLVSKTA SHASHTGALM AVLLSWCNSS PDLFSNLMSW ATSTRETRST SVSLSIGEVL 120
  121 GACGIILCIV EGSIFIIMSR THIEISQIQK LSIMRDLLFS LAAMCVMSYV SLMNQVTVLN 180
  181 CLLMAFLYAF YLVVKLTFKL NHSAETPDET AADTSLRENS VSPFLDDSLM ASGLLPPIQP 240
  241 GFDISNSITH GIKPSLLSAM DFNSFLSMLE NSSLEEDDSR NEMAELNTLR SMTPGQHWSA 300
  301 SATVAGEATS AGRPFSEPTN AFTEYRDSER AINSSPAVFA PYRDNPDDEE SQEQVLLETT 360
  361 THGHFGAQEM RRFSKRSLGW IIKIFIPHLS NFSQKSISDA IFSIITVPFF IIFKLSCPQP 420
  421 PSDILSYDPT LNRYSLTTLP IILLFIQSIT APFLLCSILS VLLTYHLGYL VYLFPLILAM 480
  481 ALILLLTAFI TKVNLHNKFT LSLDSSNILQ EKLQKRKLLE RLNTSIQIIF LAIGIINIII 540
  541 WISLLANSLI EMMEIYQKIL GLSKAILGLT IFAWGNSVGD LISNISMCRL YKTQTHYQDR 600
  601 VRLATKFFMI SCASCLGGVM LNSMGGIGFS GLVSMLFIGA FNDNEWWFLR KVKLQETSQL 660
  661 DNTLNYKFIV SCVFIILQII LLLLFFGGPN NIKRRLTKEM KLVGISMCGL WALATLINIL 720
  721 LELFS