YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BASS6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.99
Transmembrane Helix	99	117	0.93
Non-Cytoplasmic	118	125	0.64
Transmembrane Helix	126	143	0.92
Cytoplasmic	144	160	0.84
Transmembrane Helix	161	182	0.87
Non-Cytoplasmic	183	188	0.71
Transmembrane Helix	189	210	0.85
Cytoplasmic	211	218	0.77
Transmembrane Helix	219	243	0.86
Non-Cytoplasmic	244	253	0.80
Transmembrane Helix	254	276	0.87
Cytoplasmic	277	285	0.81
Transmembrane Helix	286	305	0.94
Non-Cytoplasmic	306	313	0.77
Transmembrane Helix	314	337	0.88
Cytoplasmic	338	352	0.84
Transmembrane Helix	353	374	0.83
Non-Cytoplasmic	375	379	0.83
Transmembrane Helix	380	401	0.93
Cytoplasmic	402	409	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVITTPIET LHLKSTLRLL PRAVYRSQRI QVFPPNIFSN TSLSSPLRID PISQVGGSRN  60
   61 LWRRYASDNF SEMGLDPGAD PFKVIEKPSI VDRMKKANSI LPHVVLASTI LALIYPPSFT 120
  121 WFTSRYFVPA LGFLMFAVGI NSNEKDFLEA FKRPKAILLG YVGQYLVKPV LGFIFGLAAV 180
  181 SLFQLPTPIG AGIMLVSCVS GAQLSNYATF LTDPALAPLS IVMTSLSTAT AVLVTPMLSL 240
  241 LLIGKKLPVD VKGMISSILQ VVIAPIAAGL LLNKLFPKVS NAIRPFLPIL SVLDTACCVG 300
  301 APLALNINSV MSPFGATILL LVTMFHLSAF LAGYFLTGSV FRNAPDAKAM QRTLSYETGM 360
  361 QSSLLALALA TKFFQDPLVG IPPAISTVVM SLMGFTLVLI WSKEKSNTF