YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BASS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.94
Transmembrane Helix	92	114	0.86
Non-Cytoplasmic	115	125	0.70
Transmembrane Helix	126	144	0.95
Cytoplasmic	145	156	0.83
Transmembrane Helix	157	176	0.92
Non-Cytoplasmic	177	184	0.70
Transmembrane Helix	185	206	0.90
Cytoplasmic	207	212	0.77
Transmembrane Helix	213	235	0.89
Non-Cytoplasmic	236	245	0.75
Transmembrane Helix	246	267	0.91
Cytoplasmic	268	276	0.74
Transmembrane Helix	277	299	0.87
Non-Cytoplasmic	300	311	0.70
Transmembrane Helix	312	331	0.92
Cytoplasmic	332	342	0.70
Transmembrane Helix	343	363	0.76
Non-Cytoplasmic	364	367	0.75
Transmembrane Helix	368	391	0.84
Cytoplasmic	392	401	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAISLSLL NGATPLKSNS LHKSRLTPLH LRTISCSRLS YSPSSREISL KTQSTVPISC  60
   61 RRSRFDFVPR CGISSNDLPT EKKKSFGEWV EFVGEAVSTA FPIWVSLGCL LGLMRPSTFN 120
  121 WVTPNWTIVG LTITMLGMGM TLTLDDLRGA LSMPKELFAG FLLQYSVMPL SAFFVSKLLN 180
  181 LPPHYAAGLI LVGCCPGGTA SNIVTYIARG NVALSVLMTA ASTVSAVIMT PLLTAKLAKQ 240
  241 YITVDALGLL MSTLQVVLLP VLAGAFLNQY FKKLVKFVSP VMPPIAVGTV AILCGYAIGQ 300
  301 NASAILMSGK QVVLASCLLH ISGFLFGYLF SRILGIDVAS SRTISIEVGM QNSVLGVVLA 360
  361 TQHFGNPLTA VPCAVSSVCH SILGSVLAGI WRRSAPKQLE D