YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21593039
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTAQTPTNI AVIKYWGKRD EVRILPINDS ISVTLDPDHL CTLTTVAVSP SFDRDRMWLN  60
   61 GKEISLSGSR YQNCLREIRS RADDVEDKEK GIKIAKKDWE KLHLHIASHN NFPTAAGLAS 120
  121 SAAGFACLVF ALAKLMNVNE DPSQLSAIAR QGSGSACRSL FGGFVKWNMG NKEDGSDSVA 180
  181 VQLVDDKHWD DLVIIIAVVS SRQKETSSTS GMRESVETSL LLQHRAKEVV PVRILQMEEA 240
  241 IKNRDFTSFT KLTCSDSNQF HAVCMDTSPP IFYMNDTSHR IISLVEKWNR SAGTPEIAYT 300
  301 FDAGPNAVMI ARNRKVAVEL LQGLLYCFPP KPDTDMKSYV LGDTSIVKEA GLEGELPQGI 360
  361 KDKIGSQDQK GEVSYFICSR PGRGPVVLQD QTQALLHPQT GLPK

Type	Start	End	Confidence
Cytoplasmic	1	111	0.54
Transmembrane Helix	112	133	0.54
Non-Cytoplasmic	134	404	0.94