YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTM1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEAERAENS WIASETSPSS SPVVIESSDF SITDGMRDVS GFGIASRPQL DKGLSENNIG  60
   61 FTERVFSAAG AAVLSAVTLN PLDVVKTRLQ AQAAGMSYSH PLSNSIGRMA FFGPNMMFAD 120
  121 LRCSPSCARA GVEGTVSICP PDCFQYKGTF DVFTKIIRQE GLGRLWRGTN AGLALAVPMV 180
  181 GIYLPFYDMF RNRLEELSRE KAPAMTFCVP TVAGSLARSL ACTVCYPIDL ARTRMQAFKE 240
  241 AKAGVKPPGV FKTLVGVFSE VRTANNLESS LHNYRGLWRG LGAQLARDVP FSAICWSTLE 300
  301 PIKKRLLGVA GNDTNLVGVF GATFSAGFIA GSIAAAATCP LDVARTRRQI EKDPGRALMM 360
  361 TTRQTLIEVW RDGGMRGLFM GMGPRVARAG PSVGIVVSFY EVVKYVLHRH ASS

Type	Start	End	Confidence
Cytoplasmic	1	164	0.77
Transmembrane Helix	165	187	0.80
Non-Cytoplasmic	188	315	0.61
Transmembrane Helix	316	341	0.69
Cytoplasmic	342	413	0.50