YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50758867
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	421	0.96
Transmembrane Helix	422	445	0.89
Cytoplasmic	446	488	0.96
Transmembrane Helix	489	512	0.88
Non-Cytoplasmic	513	519	0.83
Transmembrane Helix	520	541	0.93
Cytoplasmic	542	556	0.87
Transmembrane Helix	557	579	0.91
Non-Cytoplasmic	580	590	0.76
Transmembrane Helix	591	612	0.91
Cytoplasmic	613	642	0.92
Transmembrane Helix	643	665	0.90
Non-Cytoplasmic	666	675	0.79
Transmembrane Helix	676	701	0.87
Cytoplasmic	702	709	0.91
Transmembrane Helix	710	732	0.92
Non-Cytoplasmic	733	748	0.89
Transmembrane Helix	749	773	0.87
Cytoplasmic	774	785	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAEVIRAL EHGYRMPRTE SCPEELYDVM IRCWKTKPED RPTFEYMQSI LEDFFTATEG  60
   61 QYQKQRHPGA AEPLRPSWRP PPRSAVSIAG PGSALPLEAA PGQAERGPAP GAEAAVAMAT 120
  121 DPAANRAPLP LTSAPTRGSK MAAAAAMVER LRYLLLLLLW LHGTDSFYVP GVAPINFHWN 180
  181 DPVEIKAVKL TSSRTQLPYE YYSLPFCQPT EITYKAENLG EVLRGDRIVN TPFQVFMNVE 240
  241 KKCEVLCNFP NKPVTLTVEQ SKLMAERIRE DYYVHLIADN LPVATRLEFY SNREEEEKKK 300
  301 EKDVQFEHGY RLGFLDGNKF YLHNHLSFIL YYHREDVEEN QEPTYRVVRF EVIPQSIKLE 360
  361 DLKADEKGMC TLPEATGSAP QEIDPSKENQ LLFTYSVHWE ESDIKWASRW DTYLTMSDVQ 420
  421 IHWFSIINSV VVVFFLSGIL SMIIIRTLRK DIANYNKEDD IEDTMEESGW KLVHGDVFRP 480
  481 PQYPMILSSL LGSGIQLFCM ILIVIFVAML GMLSPSSRGA LMTTACFLFM FMGVFGGFFA 540
  541 GRLYRTLKGH RWKKGAFCTA TLYPGVVFGI CFVLNCFIWG EHSSGAVPFP TMVALLCMWF 600
  601 GISLPLVYLG YYFGFRKQPY DNPVRTNQIP RQIPEQRWYM NKFVGILMAG ILPFGAMFIE 660
  661 LFFIFSAIWE NQFYYLFGFL FLVFIILVVS CSQISIVMVY FQLCAEDYRW WWRTFLVSGG 720
  721 SAFYVLIYAV FYFVNKLDIV EFIPSLLYFG YTALMVLSFW LLTGTIGFYA AYMFVRKIYA 780
  781 AVKID