YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.56
Transmembrane Helix	37	60	0.85
Cytoplasmic	61	68	0.53
Transmembrane Helix	69	88	0.71
Non-Cytoplasmic	89	94	0.42
Transmembrane Helix	95	116	0.81
Cytoplasmic	117	129	0.48
Transmembrane Helix	130	153	0.86
Non-Cytoplasmic	154	157	0.41
Transmembrane Helix	158	179	0.87
Cytoplasmic	180	185	0.39
Transmembrane Helix	186	206	0.84
Non-Cytoplasmic	207	216	0.35
Transmembrane Helix	217	239	0.75
Cytoplasmic	240	281	0.55
Transmembrane Helix	282	304	0.80
Non-Cytoplasmic	305	320	0.59
Transmembrane Helix	321	344	0.76
Cytoplasmic	345	359	0.65
Transmembrane Helix	360	380	0.86
Non-Cytoplasmic	381	388	0.56
Transmembrane Helix	389	411	0.90
Cytoplasmic	412	419	0.73
Transmembrane Helix	420	442	0.86
Non-Cytoplasmic	443	456	0.81
Transmembrane Helix	457	480	0.86
Cytoplasmic	481	526	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKTDDFAP FPVKDQLPGV EFCVSSSPNW PEGIVLGFQH YIVMLGTTVI IPSILVPLMG  60
   61 GGDVEKAEVI NTVLFVSGIN TLLQSLFGSR LPVVMGASYA YLIPALYITF SYRFTYYLHP 120
  121 HLRFEETMRA IQGALIIASI SHMIMGFFGL WRILVRFLSP LSAAPLVILT GVGLLAFAFP 180
  181 QLARCIEIGL PALIILIILS QYLPHLFKCK RSICEQFAVL FTIAIVWAYA EILTAAGAYD 240
  241 KRPDNTQLSC RTDRSGLISA SPWVRIPYPL QWGRPSFHGS DAFAMMAATY VAIVETTGSF 300
  301 IAASRFGSAT HIPPSVLSRG IGWQGIGVLL NGLFGTATGS TALVENTGLL GLTKVGSRRV 360
  361 VQISAGFMIF FSIFGKFGAV LASIPLPIFA ALYCVLFAYV ASAGLGLLQF CNLNSFRNKF 420
  421 ILGFSIFIGL SVAQYFTEYL FISGRGPVHT RTSAFNVIMQ VIFSSAATVG IMAAFLLDCT 480
  481 HSYGHASVRR DSGRHWWEKF RVYHTDTRTE EFYALPYNLN RFFPSF