YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MGAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARISCDLRF LLIPAAFMFI YIQMRLFQTQ SQYADRLSSA IESENHCTSQ MRGLIDEVSI  60
   61 KQSRIVALED MKNRQDEELV QLKDLIQTFE KKGIAKLTQG GQMPVAAVVV MACSRADYLE 120
  121 RTVKSVLTYQ TPVASKYPLF ISQDGSDQAV KSKSLSYNQL TYMQHLDFEP VVTERPGELT 180
  181 AYYKIARHYK WALDQLFYKH KFSRVIILED DMEIAPDFFD YFEAAASLMD RDKTIMAASS 240
  241 WNDNGQKQFV HDPYALYRSD FFPGLGWMLK RSTWDELSPK WPKAYWDDWL RLKENHKGRQ 300
  301 FIRPEVCRTY NFGEHGSSLG QFFSQYLEPI KLNDVTVDWK AKDLGYLTEG NYTKYFSGLV 360
  361 RQARPIQGSD LVLKAQNIKD DVRIRYKDQV EFERIAGEFG IFEEWKDGVP RTAYKGVVVF 420
  421 RIQTTRRVFL VGPDSVMQLG IRNS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.83
Transmembrane Helix	8	27	0.82
Non-Cytoplasmic	28	444	0.99