YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ORP3C_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSPKKNENK GFFAAMTSGF SMFGTAVSRS VNGVQGNEGV EVINPEGGKE DAEEEAQKGR  60
   61 WKDEERDSYW KMMQKYIGSD ITSMVTLPVV IFEPMTMLQK MAEIMEYSHL LDQADECEDP 120
  121 YLRLVYASSW AISVYYAFQR TWKPFNPILG ETYEMVNHGG ISFISEQVSH HPPMSAGHAE 180
  181 NEHFIYDITS KLKTKLLGNS VDVYPVGRTR VTLKKDGVVL DLVPPLTKIH NLIFGRTWVD 240
  241 SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYSA AEEPKIMMTG KWNEKMSYQP 300
  301 CDAEGEPLPG TELKEVWHLA DVPKNDNFQY THFAHKINSF DTAPAKLLAS DSRIRPDRYS 360
  361 LEQGDLSKAG SEKHSLEERQ RAEKRTRETK GQKFTPRWFD LTDEITPTPW GDIEVYQYNG 420
  421 KYNEHRDTAE SSSSASNETD LKSIEFNPWQ YGNISTE

Type	Start	End	Confidence
Signal Peptide	1	28	0.72
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	457	0.98