YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22135878, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLASSLVPH QWRLLTSPQL SLQAFIFSTA STTKSHTFWS PSLRQCRNLQ TALSPIVSSS  60
   61 YLPTSYITQK QIEIPTSPEK QSPPVQEGLG AFQKLPMVMP SIDLYASALR KSKRVQPTKG 120
  121 IANIAKRERN RGAKQLDAFM KELALPLKGY MESFPRKKLL HPYERSLIDL TLGDGKYEEV 180
  181 LGKVDVLRKK VQSVGKEHAS LCAKALSKKE AEERLSEGVE KLELVFQQQG GAVDDLLTIA 240
  241 KVLRAMPVVD LEMPTLCLVG APNVGKSSLV RILSTGKPEI CNYPFTTRGI LMGHIVLNYQ 300
  301 RFQVTDTPGL LRRCDEDRNN LEKLTLAVLT HLPTAVLYVH DLTGECGTSP SDQFQIYKEM 360
  361 KERFKDYLWI DAVSKCDLLG GSPVMYAKED RSSDDAEIIK YRERGPDESI HVSVKTEQGL 420
  421 NELKNKVKEV LSSEMEKIQS GEKTDQSVAT C

Type	Start	End	Confidence
Signal Peptide	1	32	0.80
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	451	0.99