YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50752967
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	628	0.57
Transmembrane Helix	629	652	0.59
Cytoplasmic	653	653	0.25
Transmembrane Helix	654	675	0.76
Non-Cytoplasmic	676	676	0.17
Transmembrane Helix	677	691	0.64
Cytoplasmic	692	707	0.51
Transmembrane Helix	708	731	0.86
Non-Cytoplasmic	732	752	0.66
Transmembrane Helix	753	772	0.90
Cytoplasmic	773	779	0.65
Transmembrane Helix	780	801	0.92
Non-Cytoplasmic	802	831	0.74
Transmembrane Helix	832	853	0.89
Cytoplasmic	854	867	0.76
Transmembrane Helix	868	890	0.88
Non-Cytoplasmic	891	941	0.87
Transmembrane Helix	942	965	0.82
Cytoplasmic	966	996	0.93
Transmembrane Helix	997	1016	0.90
Non-Cytoplasmic	1017	1021	0.62
Transmembrane Helix	1022	1044	0.84
Cytoplasmic	1045	1057	0.87
Transmembrane Helix	1058	1080	0.94
Non-Cytoplasmic	1081	1607	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGTGRSKGD QRGKKVEFQP SCQACSFQGS STREDKTDDY ETAPACSVWH TGSARSPKRE  60
   61 STDSTTIACM NHKSPQGFRS IPTVPGQSPS QHPGGPAHRS ASGPTPLPEG PAHRSSPAGT 120
  121 QPPARSPRTR PPHTGSASSA PGPPPPRAQH GSRSLRLVVL RHFVAGPRPR YGRFENGPER 180
  181 LGLAAPGRPS LARTRFAAGE GTHRRLTALP WRRQPGPPRE ARPCFPVREP EVPRGSFSAA 240
  241 SLSVLQDGRK SFTCPSYWAL LLRALLSCAL HTASKVLEPH TPLGNAVVFF NSRKENTLYF 300
  301 KRANYQMQQP VCQQASSRDA EQSPAIAQLE PTYCTDLHTC SCGADRSLSQ RKRILPTALQ 360
  361 QPSTNLFVPG AKYSAVSPAH VHPSRALQGG TEPSPQDAAA ADGRGVRPPR TATRQRCSPT 420
  421 ARAPQVAGLP AAAAPQPERG EGRPRRAPLT DAPHMSMNNS PNVFLDPNAN RFQVNIINES 480
  481 HNSNEASQED VESDPPHYEE TSFTEEAHNR LRISYRPGKR ELYDNFLQNG EKPEASLHPC 540
  541 DTHNKMYYLQ TFGHNTMDPV PKIDYYRNTG SVSGNKLNRP SLLEIHEQLA KNIAVSTGSV 600
  601 ERVANGESTA GEETAASKEE EKKTGFVKFG WVKGVLVRCM LNIWGVMLFI RLSWIVGQAG 660
  661 IGLGVIIILL ATMVTSITGL STSAIATNGF VRGGGAYYLI SRSLGPEFGG SIGLIFAFAN 720
  721 AVAVAMYVVG FAETVVELLK ESDTIMVDES NDIRIIGTIT VVCLLGISVA GMEWEAKAQV 780
  781 ILLIVLLIAI ANFFIGTVIP TNNEKKARGF FNYQASIFAE NFGPDFRSGE GFFSVFAIFF 840
  841 PAATGILAGA NISGDLKDPQ GAIPKGTMLA ILITTVAYIG VAVCAASCVV RDATGNVNDT 900
  901 VIPGMSCNGS SACNLGYDFS RCRSQPCDYG LMNNFQVMSM VSGFGPLITA GIFSATLSSA 960
  961 LASLVSAPKV FQALCKDNVY KGLHFFAKGY GKNNEPIRGY VLTFVIAMAF ILIAQLNTIA1020
 1021 PIISNFFLAS YALINFSCFH ASYAKSPGWR PAFRYYNMWI SLFGALLCCG VMFVINWWAA1080
 1081 LITYVIELFL YIYVTYKKPE VNWGSSTQAL CYIKALDSAL ALTTVEDHVK NFRPQCIVLT1140
 1141 GAPMIRPALL DITHSFTKNN GLCICCEVYT GPRKLCVKEM NSGMAKKQAW LTKNKRKAFY1200
 1201 AAVAADSFRD GVKSLLQASG LGRMKPNTLV IGFKKDWRNA AVTQVENYVG VIHDAFDFEL1260
 1261 GTIIVRIGQG FDISQVLQGQ GPQAVLDFRE MTKDSHVLLS SPATDLNFCQ RGNKPNKDDS1320
 1321 TLKLYSPGVG TAGPRTSPLR TGRLLPPDGG GKHSHPDAFR RSHGGRLEAR LAPQTAATAP1380
 1381 RAQRTPRGGG RWGGIGRGHS NLRGCRDRGA PPPAVGSAAC SRAFFPPLTA LVFPPSPPRA1440
 1441 AMPCSEAALQ PSPSKRQKGS AAGEPSARLR FTKLSENACA PSKGSARAAG YDLYSAYDYV1500
 1501 IPPMEKAVVK TDIQIALPAG CYGRVAPRSG LAAKHFIDVG AGVIDEDYRG NVGVVLFNFG1560
 1561 KETFEVKKGD RIAQLICERI FYPELEEVQA LDDTERGEGG FGSTGKN