YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TDT_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.67
Transmembrane Helix	78	104	0.75
Non-Cytoplasmic	105	122	0.61
Transmembrane Helix	123	142	0.87
Cytoplasmic	143	149	0.73
Transmembrane Helix	150	174	0.81
Non-Cytoplasmic	175	177	0.65
Transmembrane Helix	178	199	0.81
Cytoplasmic	200	219	0.90
Transmembrane Helix	220	245	0.87
Non-Cytoplasmic	246	265	0.88
Transmembrane Helix	266	288	0.91
Cytoplasmic	289	315	0.88
Transmembrane Helix	316	335	0.89
Non-Cytoplasmic	336	347	0.90
Transmembrane Helix	348	369	0.88
Cytoplasmic	370	387	0.89
Transmembrane Helix	388	408	0.89
Non-Cytoplasmic	409	424	0.86
Transmembrane Helix	425	446	0.82
Cytoplasmic	447	464	0.69
Transmembrane Helix	465	487	0.81
Non-Cytoplasmic	488	515	0.66
Transmembrane Helix	516	536	0.92
Cytoplasmic	537	540	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGDVTVAG SDDLKSPLLP VVHNDEPFER QTVGQQLRTI FTPKNCYIAL GPLLCAVVCL  60
   61 CVDLGGDETT TARNMLGVLV WMFAWWLTEA VPMPITSMTP LFLFPLFGIS AADDVANSYM 120
  121 DDVISLVLGS FILALAVEHY NIHRRLALNI TLVFCVEPLN APLLLLGICA TTAFVSMWMH 180
  181 NVAAAVMMMP VATGILQRLP SSSSTTEVVH PAVGKFSRAV VLGVIYSAAV GGMSTLTGTG 240
  241 VNLILVGMWK SYFPEADPIS FSQWFFFGFP LALCIFVVLW CVLCVMYCPK GAGQALSPYL 300
  301 HKSHLRRELD LLGPMNFAEK MVLAVFGGLV VLWMTRNITD DIPGWGRIFA GRAGDGTVSV 360
  361 MMATLLFIIP SNIKKGEKLM DWNKCKKLPW NIVLLLGAGF AIADGVRTSG LAEVLSKGLV 420
  421 FLETAPYWAI APTVCLIAAT ITEFTSNNAT TTLLVPLLIE IAKNMGIHPL LLMVPGAIGA 480
  481 QFAFLLPTGT PSNVVGFTTG HIEIKDMIKT GLPLKIAGTI FLSILMPTLG AYVFASMGGV 540
  541