YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C79F1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSFTTSLPY PFHILLVFIL SMASITLLGR ILSRPTKTKD RSCQLPPGPP GWPILGNLPE  60
   61 LFMTRPRSKY FRLAMKELKT DIACFNFAGI RAITINSDEI AREAFRERDA DLADRPQLFI 120
  121 METIGDNYKS MGISPYGEQF MKMKRVITTE IMSVKTLKML EAARTIEADN LIAYVHSMYQ 180
  181 RSETVDVREL SRVYGYAVTM RMLFGRRHVT KENVFSDDGR LGNAEKHHLE VIFNTLNCLP 240
  241 SFSPADYVER WLRGWNVDGQ EKRVTENCNI VRSYNNPIID ERVQLWREEG GKAAVEDWLD 300
  301 TFITLKDQNG KYLVTPDEIK AQCVEFCIAA IDNPANNMEW TLGEMLKNPE ILRKALKELD 360
  361 EVVGRDRLVQ ESDIPNLNYL KACCRETFRI HPSAHYVPSH LARQDTTLGG YFIPKGSHIH 420
  421 VCRPGLGRNP KIWKDPLVYK PERHLQGDGI TKEVTLVETE MRFVSFSTGR RGCIGVKVGT 480
  481 IMMVMLLARF LQGFNWKLHQ DFGPLSLEED DASLLMAKPL HLSVEPRLAP NLYPKFRP

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.59
Transmembrane Helix	10	32	0.79
Cytoplasmic	33	472	0.57
Transmembrane Helix	473	491	0.59
Non-Cytoplasmic	492	538	0.78