YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.81
Transmembrane Helix	53	77	0.86
Non-Cytoplasmic	78	83	0.65
Transmembrane Helix	84	103	0.88
Cytoplasmic	104	117	0.59
Transmembrane Helix	118	139	0.72
Non-Cytoplasmic	140	180	0.64
Transmembrane Helix	181	203	0.91
Cytoplasmic	204	215	0.78
Transmembrane Helix	216	235	0.89
Non-Cytoplasmic	236	247	0.75
Transmembrane Helix	248	269	0.88
Cytoplasmic	270	285	0.85
Transmembrane Helix	286	308	0.90
Non-Cytoplasmic	309	329	0.88
Transmembrane Helix	330	353	0.90
Cytoplasmic	354	380	0.86
Transmembrane Helix	381	399	0.91
Non-Cytoplasmic	400	406	0.67
Transmembrane Helix	407	428	0.90
Cytoplasmic	429	443	0.87
Transmembrane Helix	444	464	0.89
Non-Cytoplasmic	465	470	0.68
Transmembrane Helix	471	490	0.94
Cytoplasmic	491	500	0.74
Transmembrane Helix	501	522	0.93
Non-Cytoplasmic	523	528	0.81
Transmembrane Helix	529	548	0.93
Cytoplasmic	549	569	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGHEGFSNQ RLSSATWFSH FRASALRSKS LPPPSSQTAV RSTSGDSLVR RLGLFDLILL  60
   61 GVGASIGAGV FVVTGTVARD AGPGVTISFL LAGASCVLNA LCYAELSSRF PAVVGGAYMY 120
  121 SYSAFNEITA FLVFVQLMLD YHIGAASISR SLASYAVALL ELFPALKGSI PLWMGSGKEL 180
  181 LGGLLSLNIL APILLALLTL VLCQGVRESS AVNSVMTATK VVIVLVVICA GAFEIDVANW 240
  241 SPFAPNGFKA VLTGATVVFF SYVGFDAVAN SAEESKNPQR DLPIGIMGSL LVCISLYIGV 300
  301 CLVLTGMVPF SLLSEDAPLA EAFSSKGMKF VSILISIGAV AGLTTTLLVG LYVQSRLYLG 360
  361 LGRDGLLPSI FSRIHPTLHT PLHSQIWCGI VAGVLAGIFN VHSLSHILSV GTLTGYSVVA 420
  421 ACVVALRLND KKDRESSNRW TSSWQEGVIC LVIIACSGFG AGVFYRFSAS VIFILLSVGV 480
  481 AVVASAVLHY RQAYALPLGS GFSCPGVPIV PSVCIFFNIF LFAQLHYEAW IRFVVVSVLA 540
  541 TAVYALYGQY HADPSMLDYQ RAPETESDA