YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.78
Transmembrane Helix	29	50	0.74
Non-Cytoplasmic	51	70	0.56
Transmembrane Helix	71	92	0.84
Cytoplasmic	93	97	0.46
Transmembrane Helix	98	118	0.92
Non-Cytoplasmic	119	145	0.59
Transmembrane Helix	146	167	0.59
Cytoplasmic	168	188	0.94
Transmembrane Helix	189	211	0.94
Non-Cytoplasmic	212	218	0.87
Transmembrane Helix	219	239	0.94
Cytoplasmic	240	362	0.64
Transmembrane Helix	363	385	0.83
Non-Cytoplasmic	386	407	0.69
Transmembrane Helix	408	430	0.87
Cytoplasmic	431	449	0.71
Transmembrane Helix	450	474	0.83
Non-Cytoplasmic	475	491	0.66
Transmembrane Helix	492	514	0.85
Cytoplasmic	515	534	0.71
Transmembrane Helix	535	554	0.97
Non-Cytoplasmic	555	567	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVEMHGDVS KWEGYADWRN KAALRGRHGG MLAASFVLAV EILENLAFLA NASNLVLYLK  60
   61 NFMHMSLARS SSEVTTFMAT AFLLALLGGF LADAFFSTFV IFLISASIEF LGLILLTIQA 120
  121 RRPSLMPPPC KSSAALRCEV VGGSKAAFLF VGLYLVSLGI GGIKGSLPSH GAEQFDEGTP 180
  181 KGRKQRSTFF NYYVFCLSCG ALVAVTFVVW IEDNKGWEWG FGVSTISIFL SILVFLLGSR 240
  241 FYKNKIPRGS PLTTIFKVLL AASIVSCSSK TSSNHFTSRE VQSEHEEKTP SQSLTNSLTC 300
  301 LNKAIEGKTH HIWLECTVQQ VEDVKIVLKM LPIFGCTIML NCCLAQLSTY SVHQAATMNR 360
  361 KIVNFNVPSA SLPVFPVVFM LILAPTYDHL IIPFARKVTK SEIGITHLQR IGVGLVLSIV 420
  421 AMAVAALVEL KRKQVAREAG LLDSEETLPI TFLWIALQYL FLGSADLFTL AGLLEFFFTE 480
  481 APSSMRSLAT SLSWASLALG YYLSSVMVPI VNRVTKSAGQ SPWLGEKLNR NRLDLFYWLM 540
  541 CVLSVVNFLH YLFWAKRYKY ISTGSIS