YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TAR2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQIPRFLSW RNMLVLSLAI NFSLILKILK GDRERGDSWD RTAYVSIWPV VSTTASESSS  60
   61 LSSASCNYSK IEEDDDRIIN LKFGDPTVYE RYWQENGEVT TMVIPGWQSL SYFSDENNLC 120
  121 WFLEPELAKE IVRVHKVVGN AVTQDRFIVV GTGSTQLYQA ALYALSPHDD SGPINVVSAT 180
  181 PYYSTYPLIT DCLKSGLYRW GGDAKTYKED GPYIELVTSP NNPDGFLRES VVNSTEGILI 240
  241 HDLAYYWPQY TPITSPADHD VMLFTASKST GHAGIRIGWA LVKDRETARK MIEYIELNTI 300
  301 GVSKDSQLRV AKVLKVVSDS CGNVTGKSFF DHSYDAMYER WKLLKQAAKD TKRFSVPDFV 360
  361 SQRCNFFGRV FEPQPAFAWF KCEEGIVDCE KFLREEKKIL TKSGKYFGDE LSNVRISMLD 420
  421 RDTNFNIFLH RITSSFNSTL

Type	Start	End	Confidence
Cytoplasmic	1	7	0.47
Transmembrane Helix	8	29	0.54
Non-Cytoplasmic	30	440	0.92