YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.98
Transmembrane Helix	39	61	0.86
Non-Cytoplasmic	62	74	0.74
Transmembrane Helix	75	97	0.86
Cytoplasmic	98	114	0.84
Transmembrane Helix	115	136	0.92
Non-Cytoplasmic	137	154	0.91
Transmembrane Helix	155	175	0.91
Cytoplasmic	176	184	0.84
Transmembrane Helix	185	208	0.89
Non-Cytoplasmic	209	217	0.83
Transmembrane Helix	218	239	0.92
Cytoplasmic	240	259	0.87
Transmembrane Helix	260	278	0.88
Non-Cytoplasmic	279	295	0.75
Transmembrane Helix	296	319	0.77
Cytoplasmic	320	336	0.82
Transmembrane Helix	337	359	0.93
Non-Cytoplasmic	360	380	0.89
Transmembrane Helix	381	402	0.81
Cytoplasmic	403	412	0.70
Transmembrane Helix	413	435	0.89
Non-Cytoplasmic	436	442	0.76
Transmembrane Helix	443	465	0.89
Cytoplasmic	466	482	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDAESTSKT SLLLPVERVE NVTWRDLRDG LFTAELKRLI CFAAPMAAVV IAQFMLQIIS  60
   61 MVMVGHLGNL SLASASLASS FCNVTGFSFI VGLSCALDTL SGQAYGAKLY RKVGVQTYTA 120
  121 MFCLALVCLP LTLIWLNMET LLVFLGQDPS IAHEAGRYAA CLIPGLFAYA VLQPLTRYFQ 180
  181 NQSMITPLLI TSCFVFCLHV PLCWLLVYKS GLGNLGGALA LSFSNCLYTI ILGSLMCFSS 240
  241 ACSETRAPLS MEIFDGIGEF FRYALPSAAM ICLEWWSYEL IILLSGLLPN PQLETSVLSV 300
  301 CLQTTATVYS IHLAIAAAAS TRISNELGAG NSRAANIVVY AAMSLAVVEI LILSTSLLVG 360
  361 RNVFGHVFSS DKETIDYVAK MAPLVSISLI LDGLQGVLSG IARGCGWQHI GAYINLGAFY 420
  421 LWGIPIAASL AFWIHLKGVG LWIGIQAGAV LQTLLLTLVT GCTNWESQAD KARNRMALAY 480
  481 GT