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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y5838_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG  60
   61 YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA DLTGLDLSRN NFSGPLPANI 120
  121 STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV 180
  181 SDNRLVGPIP NFNQTLQFKQ ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA 240
  241 LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT 300
  301 EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP 360
  361 LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW PSRLKIAIGT AKGLAWLHHS 420
  421 CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS 480
  481 RTMVATPKGD VYSFGVVLLE LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL 540
  541 QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD 600
  601 ILIPSESGEG DFIEELIVAR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle