YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRO8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	55	0.91
Transmembrane Helix	56	77	0.94
Cytoplasmic	78	97	0.94
Transmembrane Helix	98	122	0.92
Non-Cytoplasmic	123	154	0.95
Transmembrane Helix	155	175	0.90
Cytoplasmic	176	195	0.82
Transmembrane Helix	196	217	0.94
Non-Cytoplasmic	218	235	0.85
Transmembrane Helix	236	255	0.95
Cytoplasmic	256	265	0.87
Transmembrane Helix	266	285	0.91
Non-Cytoplasmic	286	424	0.61
Transmembrane Helix	425	441	0.77
Cytoplasmic	442	538	0.94
Transmembrane Helix	539	562	0.90
Non-Cytoplasmic	563	596	0.94
Transmembrane Helix	597	617	0.93
Cytoplasmic	618	728	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVLTLLVL RLLMNLLLIG WISLWIIKPT TIWIQSWRQA EDTARHTFFG YYGLNFAVFS  60
   61 FPPIALSIVG LIYLSLLPQH HHPTRGGRGA AITVSRPAII NSFIGIVSCF EILALLLFLL 120
  121 FLAWNFYARV SNDFKKLMPV KTMNLNLWQL KYYRVATRFG LLAEACLSLL LFPVLRGLSM 180
  181 FRLLNIEFAA SVKYHVWFGT GLIFFSLVHG GSTLFIWTIT HHIEEEIWKW QRTGRVYVAG 240
  241 LISLVTGLLM WITSLPQIRR KNFEVFYYTH HLYIVFLVAF LFHAGDRHFY WVLPGMFLFG 300
  301 LDKILRIVQS RSESCILSAN LFSCKAIELV LPKDPMLNYA PSSFIFLNIP LVSRFQWHPF 360
  361 SIISSSSVDK HSLSIMMKCE GDWTNSVYNK IEEAANCENK INNIIVRVEG PYGPASVDFL 420
  421 RYDNLFLVAG GIGITPFLSI LKELASKNRL KSPKRVQLVF AVRTFQDLNM LLPIASIIFN 480
  481 PIYNLNLKLK VFVTQEKKPS NGTTTLQEFL AQSQVQSIHL GTDEDYSRFP IRGPESFRWL 540
  541 ATLVLITVLT FLGFLIGLSH FFIPSEHKNH SGVMKLAASG AMKTAKEKVP SWVPDLIIIV 600
  601 SYVIAISVGG FAATILQRRR KHKEAPRMSK EVVIKPEERN FTELKPIPIT EEHEIHIGER 660
  661 PKLEEIMSEF EKNLRGWSSV GVLVCGPESV KEAVASMCRQ WPQCFGVEDL RRSRMKMNLN 720
  721 FHSLNFNL