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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSLE1_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNKDDRIRP VHEADGEPLF ETRRRTGRVI AYRFFSASVF VCICLIWFYR IGEIGDNRTV  60
   61 LDRLIWFVMF IVEIWFGLYW VVTQSSRWNP VWRFPFSDRL SRRYGSDLPR LDVFVCTADP 120
  121 VIEPPLLVVN TVLSVTALDY PPEKLAVYLS DDGGSELTFY ALTEAAEFAK TWVPFCKKFN 180
  181 VEPTSPAAYL SSKANCLDSA AEEVAKLYRE MAARIETAAR LGRIPEEARV KYGDGFSQWD 240
  241 ADATRRNHGT ILQVLVDGRE GNTIAIPTLV YLSREKRPQH HHNFKAGAMN ALLRVSSKIT 300
  301 CGKIILNLDC DMYANNSKST RDALCILLDE KEGKEIAFVQ FPQCFDNVTR NDLYGSMMRV 360
  361 GIDVEFLGLD GNGGPLYIGT GCFHRRDVIC GRKYGEEEEE EESERIHENL EPEMIKALAS 420
  421 CTYEENTQWG KEMGVKYGCP VEDVITGLTI QCRGWKSAYL NPEKQAFLGV APTNLHQMLV 480
  481 QQRRWSEGDF QIMLSKYSPV WYGKGKISLG LILGYCCYCL WAPSSLPVLI YSVLTSLCLF 540
  541 KGIPLFPKVS SSWFIPFGYV TVAATAYSLA EFLWCGGTFR GWWNEQRMWL YRRTSSFLFG 600
  601 FMDTIKKLLG VSESAFVITA KVAEEEAAER YKEEVMEFGV ESPMFLVLGT LGMLNLFCFA 660
  661 AAVARLVSGD GGDLKTMGMQ FVITGVLVVI NWPLYKGMLL RQDKGKMPMS VTVKSVVLAL 720
  721 SACTCLAFL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle