YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.93
Transmembrane Helix	43	66	0.82
Non-Cytoplasmic	67	83	0.75
Transmembrane Helix	84	105	0.89
Cytoplasmic	106	112	0.68
Transmembrane Helix	113	132	0.93
Non-Cytoplasmic	133	159	0.84
Transmembrane Helix	160	182	0.79
Cytoplasmic	183	202	0.92
Transmembrane Helix	203	225	0.92
Non-Cytoplasmic	226	232	0.87
Transmembrane Helix	233	256	0.91
Cytoplasmic	257	346	0.94
Transmembrane Helix	347	368	0.82
Non-Cytoplasmic	369	392	0.77
Transmembrane Helix	393	413	0.86
Cytoplasmic	414	428	0.74
Transmembrane Helix	429	449	0.92
Non-Cytoplasmic	450	467	0.82
Transmembrane Helix	468	492	0.84
Cytoplasmic	493	501	0.81
Transmembrane Helix	502	525	0.79
Non-Cytoplasmic	526	550	0.83
Transmembrane Helix	551	570	0.97
Cytoplasmic	571	591	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEINKQSNK WEQEEVSNEN NWELAEEESV DWRGRPSNPN KHGGMRAALF VLGLQAFEIM  60
   61 GIAAVGNNLI TYVINEMHFP LSKAANIVTN FVGTIFIFAL LGGYLSDAFL GSFWTIIIFG 120
  121 FVELSGFILL SVQAHLPQLK PPKCNPLIDQ TCEEAKGFKA MIFFMALYLV ALGSGCVKPN 180
  181 MIAHGADQFS QSHPKQSKRL SSYFNAAYFA FSMGELIALT LLVWVQTHSG MDIGFGVSAA 240
  241 AMTMGIISLV SGTMYFRNKR PRRSIFTPIA HVIVAAILKR KLASPSDPRM LHGDHHVAND 300
  301 VVPSSTLPHT PRFRFLDKAC IKIQDTNTKE SPWRLCTVTQ VEQVKTLISL VPIFASTIVF 360
  361 NTILAQLQTF SVQQGSSMNT RLSNSFHIPP ASLQAIPYIM LIFLVPLYDS FLVPFARKLT 420
  421 GHNSGIPPLT RIGIGLFLST FSMVSAAMLE KKRRDSSVLD GRILSIFWIT PQFLIFGISE 480
  481 MFTAVGLIEF FYKQSAKGME SFLMALTYCS YSFGFYFSSV LVSVVNKITS TSVDSKGWLG 540
  541 ENDLNKDRLD LFYWLLAVLS LLNFLSYLFW SRWNIKSSRR NNTNVVGDEN I