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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HGL2_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS  60
   61 SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR KRKKYHRHTT DQIRHMEALF 120
  121 KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK 180
  181 AMRESFSKAN SSCPNCGGGP DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL 240
  241 GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP 300
  301 QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE 360
  361 GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE KWAIVDVSVS VEDSNTEKEA 420
  421 SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL 480
  481 QLHCERLVFF MATNVPTKDS LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT 540
  541 KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA 600
  601 HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA 660
  661 GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG SLLTLALQTL INPSPAAKLN 720
  721 MESVESVTNL VSVTLHNIKR SLQIEDC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle