YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMN9_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.92
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	281	0.99
Transmembrane Helix	282	304	0.90
Cytoplasmic	305	345	0.96
Transmembrane Helix	346	369	0.92
Non-Cytoplasmic	370	378	0.79
Transmembrane Helix	379	398	0.94
Cytoplasmic	399	417	0.82
Transmembrane Helix	418	438	0.94
Non-Cytoplasmic	439	450	0.82
Transmembrane Helix	451	474	0.87
Cytoplasmic	475	496	0.96
Transmembrane Helix	497	523	0.82
Non-Cytoplasmic	524	534	0.79
Transmembrane Helix	535	560	0.89
Cytoplasmic	561	569	0.85
Transmembrane Helix	570	591	0.90
Non-Cytoplasmic	592	611	0.82
Transmembrane Helix	612	633	0.93
Cytoplasmic	634	644	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFYRSSRRL QILGSVILLL SIHVAHSFYL PGVAPQDFEK GDELKVKVNK LTSIKTQLPY  60
   61 SYYSLPFCRP KKIVDSTENL GEVLRGDRIE NAPYSFKMRE AQMCNVLGRV MLDAKSAKAF 120
  121 KEKIDDEYRV NMILDNLPLV VPIERIDPGQ GSPSVVYQLG YHVGLKGQYE GSKEQKYFMH 180
  181 NHLAFTVRYH RDMQTDAARI VGFEVKPYSV KHEYEGQWSE KTRLTTCDPH TKRLVVSSAT 240
  241 PQEVENKKEI IFTYDVDFQE SEVKWASRWD AYLLMSDNQI HWFSIVNSLM IVLFLSGMVA 300
  301 MIMLRTLYRD ISRYNELETQ EEAQEETGWK LVHGDVFRPP ANSDLLCVYV GTGVQCLGMV 360
  361 LVTMIFAMLG FLSPSNRGGL MTAMLLLWVF MGLFAGYASS RLYKMFKGTE WKRIAFRTAF 420
  421 LFPAVVSAIF FVLNALIWGQ KSSGAVPFGT MFALIFLWFG ISVPLVFVGA YLGFKKPPLD 480
  481 DPVKTNKIPR QIPEQAWYMN PIFSILIGGI LPFGAVFIEL FFILTSIWLN QFYYIFGFLF 540
  541 LVFVILMVTC AEITIVLCYF QLCSEDYLWW WRSYLTSGSS AVYLFLYAAF YFFTKLQITK 600
  601 LVSAMLYFGY MLIASYAFFV LTGTIGFYAC LWFTRLIYSS VKID